Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47519 * 2 1 4 4 C 1.50709 * 109.47079 * 119.99911 * 2 1 3 5 5 H 1.07995 * 119.99669 * 119.99531 * 4 2 1 6 6 C 1.37871 * 119.99690 * 300.27940 * 4 2 1 7 7 N 1.31515 * 120.00347 * 359.71672 * 6 4 2 8 8 Si 1.86799 * 119.99721 * 179.72516 * 6 4 2 9 9 H 1.48501 * 109.47508 * 89.99751 * 8 6 4 10 10 H 1.48506 * 109.47248 * 209.99889 * 8 6 4 11 11 H 1.48505 * 109.46970 * 329.99344 * 8 6 4 12 12 C 1.50697 * 109.47259 * 239.99832 * 2 1 3 13 13 C 1.38259 * 120.00180 * 294.36029 * 12 2 1 14 14 C 1.38209 * 120.00108 * 179.97438 * 13 12 2 15 15 C 1.38259 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.38213 * 119.99784 * 359.97186 * 15 14 13 17 17 C 1.38219 * 119.99970 * 114.08899 * 12 2 1 18 18 C 1.50701 * 119.99792 * 359.97438 * 17 12 2 19 19 F 1.39902 * 109.46840 * 84.22761 * 18 17 12 20 20 H 1.09002 * 109.47249 * 60.00059 * 1 2 3 21 21 H 1.08996 * 109.47519 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47168 * 300.00291 * 1 2 3 23 23 H 0.97002 * 119.99819 * 180.02562 * 7 6 4 24 24 H 1.08000 * 119.99664 * 359.97438 * 13 12 2 25 25 H 1.08001 * 120.00067 * 179.97438 * 14 13 12 26 26 H 1.07990 * 120.00720 * 179.97438 * 15 14 13 27 27 H 1.07995 * 120.00568 * 179.97438 * 16 15 14 28 28 H 1.08996 * 109.46782 * 204.22465 * 18 17 12 29 29 H 1.08999 * 109.47401 * 324.22356 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6944 -0.2427 2.4827 7 7 0.9384 0.8266 2.6034 8 14 2.3108 -1.1277 4.0079 9 1 3.6176 -0.5545 4.4189 10 1 1.3283 -0.9596 5.1088 11 1 2.4762 -2.5729 3.7087 12 6 2.0323 -0.7104 -1.2304 13 6 1.7971 -2.0632 -1.3920 14 6 2.2574 -2.7147 -2.5207 15 6 2.9526 -2.0135 -3.4885 16 6 3.1867 -0.6609 -3.3275 17 6 2.7233 -0.0084 -2.2000 18 6 2.9738 1.4675 -2.0270 19 9 4.1169 1.6577 -1.2432 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7010 1.1559 3.4844 24 1 1.2538 -2.6109 -0.6363 25 1 2.0741 -3.7715 -2.6468 26 1 3.3126 -2.5225 -4.3703 27 1 3.7301 -0.1131 -4.0832 28 1 3.1223 1.9277 -3.0038 29 1 2.1159 1.9266 -1.5358 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016327.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = -41.272408 kcal Electronic energy + Delta-G solvation = -13499.991897 eV Core-core repulsion = 11108.759166 eV Total energy + Delta-G solvation = -2391.232731 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.96106 -38.81488 -34.41874 -31.82227 -31.20686 -28.34277 -25.74994 -25.10571 -22.74019 -20.93970 -19.43660 -16.40333 -16.17872 -15.49215 -15.17648 -14.86763 -14.32318 -13.80088 -13.39694 -12.89257 -12.52404 -12.16169 -11.73127 -11.44280 -11.08547 -10.88303 -10.81291 -10.50480 -10.38421 -10.23715 -10.01181 -9.37646 -8.96785 -8.36530 -8.29688 -7.85427 -6.01102 -4.06827 1.88453 2.08600 3.31538 3.37803 3.41190 4.34753 4.47786 5.13831 5.21939 5.30309 5.43822 5.54316 5.64006 5.78738 6.10542 6.22658 6.27980 6.56388 6.64571 6.79220 6.95644 7.00392 7.16306 7.17348 7.27757 7.63775 7.72178 7.93032 8.07271 8.38338 8.94486 9.57352 11.05085 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.011197 C = 0.009974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.029620 B = 2500.106718 C = 2806.521462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 H 0.041 0.959 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.009 4.009 13 C -0.114 4.114 14 C -0.117 4.117 15 C -0.153 4.153 16 C -0.104 4.104 17 C -0.152 4.152 18 C 0.111 3.889 19 F -0.211 7.211 20 H 0.008 0.992 21 H 0.029 0.971 22 H 0.087 0.913 23 H 0.261 0.739 24 H 0.125 0.875 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -2.000 -9.288 9.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.059 0.941 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.009 4.009 13 C -0.132 4.132 14 C -0.135 4.135 15 C -0.171 4.171 16 C -0.122 4.122 17 C -0.152 4.152 18 C 0.056 3.944 19 F -0.192 7.192 20 H 0.027 0.973 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.227 -1.875 -9.125 9.396 hybrid contribution 0.423 -0.540 0.875 1.112 sum 1.650 -2.415 -8.251 8.754 Atomic orbital electron populations 1.21793 0.97453 0.99436 1.00319 1.18025 0.92875 0.95963 0.88641 0.94099 1.21074 1.31000 1.12430 0.89785 0.92456 1.24939 0.94992 0.95027 0.98939 1.69872 1.36671 1.22955 1.23433 0.86571 0.78629 0.80091 0.82615 1.20616 1.21218 1.19906 1.20600 0.91614 0.93843 0.94866 1.21118 1.00346 0.94662 0.97034 1.21144 0.98560 0.99208 0.94628 1.20853 1.02239 0.94392 0.99627 1.20861 0.99531 0.94759 0.97092 1.20149 1.02858 0.95938 0.96303 1.20714 0.86236 0.93433 0.94022 1.92796 1.52994 1.96118 1.77264 0.97304 0.95201 0.89429 0.92939 0.85695 0.86947 0.87024 0.86969 0.91379 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.83 37.15 0.33 -2.82 15 2 C 0.06 1.57 2.21 -92.92 -0.21 1.37 15 3 H 0.04 1.09 5.73 -51.93 -0.30 0.79 15 4 C -0.50 -13.87 8.09 -34.44 -0.28 -14.15 15 5 H 0.06 1.58 7.43 -52.49 -0.39 1.19 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.27 11.31 55.43 0.63 -24.65 15 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 15 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 12 C -0.01 -0.20 4.75 -104.62 -0.50 -0.70 15 13 C -0.11 -2.29 8.59 -39.58 -0.34 -2.63 15 14 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 15 15 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 15 16 C -0.10 -1.75 9.68 -39.58 -0.38 -2.13 15 17 C -0.15 -2.97 5.60 -104.62 -0.59 -3.55 15 18 C 0.11 2.00 6.80 36.01 0.24 2.24 15 19 F -0.21 -4.44 17.34 2.25 0.04 -4.40 15 20 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 15 21 H 0.03 0.67 7.74 -51.93 -0.40 0.27 15 22 H 0.09 2.28 6.06 -51.93 -0.31 1.97 15 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.13 2.54 7.77 -52.49 -0.41 2.13 15 25 H 0.11 1.58 8.06 -52.49 -0.42 1.15 15 26 H 0.11 1.43 8.06 -52.49 -0.42 1.00 15 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.07 0.96 8.05 -51.93 -0.42 0.54 15 29 H 0.09 1.60 6.55 -51.93 -0.34 1.26 15 LS Contribution 249.41 15.07 3.76 3.76 Total: -1.00 -29.12 249.41 -6.60 -35.72 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.40 Total: -0.91 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -2.61 Total: -25.96 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.63 Total: -24.65 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.04 Total: -4.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.12 -6.60 -35.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016327.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.550 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds