Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37885 * 126.64711 * 2 1 4 4 C 1.39988 * 125.91749 * 359.88063 * 3 2 1 5 5 H 1.08003 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.40241 * 120.00152 * 180.02562 * 4 3 2 7 7 N 1.30697 * 119.99579 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00258 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47208 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47147 * 119.99926 * 8 6 4 11 11 H 1.48503 * 109.47353 * 239.99499 * 8 6 4 12 12 N 1.33541 * 108.14618 * 180.02562 * 3 2 1 13 13 C 1.31881 * 109.09659 * 359.88359 * 12 3 2 14 14 C 1.35348 * 126.65107 * 179.97438 * 2 1 3 15 15 C 1.50726 * 129.36549 * 0.13684 * 14 2 1 16 16 O 1.43447 * 107.95820 * 164.97062 * 15 14 2 17 17 C 1.42975 * 114.38681 * 50.72142 * 16 15 14 18 18 C 1.51061 * 128.97299 * 180.22402 * 13 12 3 19 19 H 1.09000 * 109.46875 * 270.02489 * 1 2 3 20 20 H 1.08997 * 109.47086 * 30.02905 * 1 2 3 21 21 H 1.08999 * 109.46889 * 150.02693 * 1 2 3 22 22 H 0.97000 * 119.99831 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.77264 * 45.33705 * 15 14 2 24 24 H 1.08998 * 109.77082 * 284.59707 * 15 14 2 25 25 H 1.09001 * 109.42312 * 48.90019 * 17 16 15 26 26 H 1.08999 * 109.42684 * 168.78075 * 17 16 15 27 27 H 1.08992 * 109.81877 * 44.48973 * 18 13 12 28 28 H 1.08994 * 109.86456 * 283.60700 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2880 1.1063 0.0000 4 6 1.8686 2.4418 -0.0024 5 1 0.8144 2.6768 -0.0048 6 6 2.8172 3.4748 -0.0026 7 7 4.0928 3.1904 -0.0001 8 14 2.2575 5.2569 -0.0065 9 1 0.7735 5.3097 -0.0095 10 1 2.7752 5.9409 1.2057 11 1 2.7791 5.9369 -1.2192 12 7 3.5544 0.6825 -0.0006 13 6 3.5681 -0.6362 0.0016 14 6 2.2730 -1.0859 0.0005 15 6 1.9087 -2.5485 -0.0016 16 8 3.0814 -3.2958 -0.3540 17 6 4.2436 -2.9657 0.4105 18 6 4.7524 -1.5740 0.0066 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5134 22 1 4.7490 3.9048 0.0001 23 1 1.1214 -2.7313 -0.7329 24 1 1.5669 -2.8447 0.9900 25 1 3.9920 -2.9663 1.4711 26 1 5.0230 -3.7041 0.2225 27 1 5.4941 -1.2289 0.7267 28 1 5.1953 -1.6165 -0.9884 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034435.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = -13.815285 kcal Electronic energy + Delta-G solvation = -13709.545044 eV Core-core repulsion = 11339.422905 eV Total energy + Delta-G solvation = -2370.122139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.14862 -38.96550 -35.32775 -34.76517 -32.07251 -31.13759 -28.54963 -27.47587 -24.60828 -23.92222 -21.55132 -19.76497 -18.75309 -17.54520 -16.97846 -16.59943 -16.52090 -15.64162 -15.32022 -14.51763 -14.37273 -14.30095 -13.66048 -13.39567 -13.05032 -12.95564 -12.62580 -12.45877 -12.35905 -11.83056 -11.71846 -11.09164 -10.78155 -9.81446 -9.74385 -8.83220 -8.36079 -6.26926 1.30231 1.42124 1.58450 1.69469 2.23630 2.59261 2.65260 2.96365 3.54715 3.99182 4.14723 4.22882 4.29715 4.42341 4.47587 4.50248 4.58816 4.69703 4.80993 4.94943 5.08016 5.21795 5.44335 5.70846 6.01560 6.26109 6.32397 6.64676 6.97557 7.35877 8.23882 8.60344 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.051232 B = 0.010139 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.396975 B = 2760.903032 C = 3261.901853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.498 5.498 3 C 0.333 3.667 4 C -0.489 4.489 5 H 0.092 0.908 6 C 0.029 3.971 7 N -0.793 5.793 8 Si 0.997 3.003 9 H -0.250 1.250 10 H -0.269 1.269 11 H -0.270 1.270 12 N -0.551 5.551 13 C -0.027 4.027 14 C -0.189 4.189 15 C 0.171 3.829 16 O -0.390 6.390 17 C 0.076 3.924 18 C -0.060 4.060 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.276 0.724 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -6.306 1.183 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.187 5.187 3 C 0.090 3.910 4 C -0.529 4.529 5 H 0.110 0.890 6 C -0.189 4.189 7 N -0.419 5.419 8 Si 0.817 3.183 9 H -0.173 1.173 10 H -0.194 1.194 11 H -0.195 1.195 12 N -0.272 5.272 13 C -0.162 4.162 14 C -0.302 4.302 15 C 0.094 3.906 16 O -0.307 6.307 17 C -0.001 4.001 18 C -0.098 4.098 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.110 0.890 22 H 0.086 0.914 23 H 0.119 0.881 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.147 0.853 27 H 0.091 0.909 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.116 -5.977 1.036 7.331 hybrid contribution -0.641 0.754 0.149 1.001 sum -4.757 -5.223 1.185 7.163 Atomic orbital electron populations 1.21793 0.76697 1.03959 1.02705 1.45007 1.06927 1.05477 1.61318 1.20822 0.83763 0.88809 0.97617 1.18587 0.95059 0.87319 1.51899 0.89045 1.26817 0.94164 1.05622 0.92344 1.70180 1.02544 1.35335 1.33847 0.84950 0.79772 0.75097 0.78442 1.17312 1.19430 1.19530 1.70824 1.19114 1.08819 1.28464 1.21294 0.94190 0.92600 1.08155 1.21592 0.92090 0.91574 1.24988 1.20611 0.87366 0.82309 1.00356 1.87889 1.19233 1.60732 1.62891 1.22686 0.87808 0.94776 0.94829 1.20589 0.94117 0.93587 1.01546 0.91386 0.90509 0.88980 0.91429 0.88119 0.91728 0.92652 0.85290 0.90932 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.19 10.85 127.77 1.39 4.58 15 2 N -0.50 -24.26 3.19 -528.93 -1.69 -25.95 15 3 C 0.33 19.47 7.45 133.31 0.99 20.46 15 4 C -0.49 -27.41 9.01 23.18 0.21 -27.20 15 5 H 0.09 4.64 7.17 -2.91 -0.02 4.61 15 6 C 0.03 1.58 5.50 85.35 0.47 2.05 15 7 N -0.79 -46.50 11.89 21.88 0.26 -46.23 15 8 Si 1.00 39.89 29.56 68.60 2.03 41.92 15 9 H -0.25 -9.29 7.11 99.48 0.71 -8.59 15 10 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 11 H -0.27 -10.49 7.11 99.48 0.71 -9.79 15 12 N -0.55 -33.94 9.40 -181.14 -1.70 -35.65 15 13 C -0.03 -1.45 7.09 42.40 0.30 -1.15 15 14 C -0.19 -8.88 6.86 41.76 0.29 -8.60 15 15 C 0.17 6.06 7.00 71.24 0.50 6.56 15 16 O -0.39 -13.80 10.74 -148.98 -1.60 -15.40 15 17 C 0.08 2.43 6.77 72.18 0.49 2.92 15 18 C -0.06 -2.49 6.57 30.16 0.20 -2.29 15 19 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.08 2.64 7.39 -2.39 -0.02 2.63 15 21 H 0.09 2.59 7.94 -2.39 -0.02 2.57 15 22 H 0.28 14.65 8.29 -92.71 -0.77 13.88 15 23 H 0.10 3.11 8.05 -2.39 -0.02 3.09 15 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.06 1.69 8.09 -2.39 -0.02 1.67 15 26 H 0.13 3.09 8.14 -2.39 -0.02 3.07 15 27 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 28 H 0.06 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -74.14 240.85 3.29 -70.86 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.16 Total: 13.11 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 4.83 Total: -2.67 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.13 Total: -107.83 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.60 Total: -15.40 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -74.14 3.29 -70.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034435.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.043 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds