Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35516 * 117.00309 * 2 1 4 4 C 1.39416 * 120.51519 * 180.02562 * 3 2 1 5 5 C 1.38186 * 118.35205 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.41292 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46953 * 124.99837 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72054 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47487 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47233 * 120.00158 * 12 10 8 15 15 H 1.48508 * 109.46883 * 239.99963 * 12 10 8 16 16 N 1.32520 * 119.17793 * 0.24861 * 5 4 3 17 17 C 1.31761 * 120.96334 * 359.48271 * 16 5 4 18 18 N 1.31794 * 121.81323 * 0.53791 * 17 16 5 19 19 H 1.08991 * 109.46787 * 299.99995 * 1 2 3 20 20 H 1.09001 * 109.46895 * 59.99862 * 1 2 3 21 21 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.08002 * 120.82454 * 359.97438 * 4 3 2 23 23 H 1.09000 * 109.46974 * 4.99586 * 6 5 4 24 24 H 1.09001 * 109.46547 * 244.99676 * 6 5 4 25 25 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 26 26 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 27 27 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 28 28 H 1.08002 * 119.09085 * 180.24463 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4358 1.2928 -0.0005 5 6 4.0163 2.5468 0.0000 6 6 5.5163 2.6932 0.0001 7 6 5.9434 3.5667 -1.1812 8 6 7.4433 3.7135 -1.1807 9 1 8.0324 3.2357 -0.4120 10 6 8.0629 4.4622 -2.1588 11 7 7.3451 5.0486 -3.0917 12 14 9.9221 4.6436 -2.1586 13 1 10.4926 3.8929 -1.0115 14 1 10.4724 4.1029 -3.4275 15 1 10.2793 6.0799 -2.0364 16 7 3.2377 3.6192 0.0061 17 6 1.9252 3.5040 0.0013 18 7 1.3310 2.3276 0.0009 19 1 -0.3632 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 4.0450 0.4010 -0.0005 23 1 5.9773 1.7096 -0.0899 24 1 5.8356 3.1604 0.9317 25 1 5.4824 4.5503 -1.0912 26 1 5.6241 3.0995 -2.1128 27 1 7.7810 5.5756 -3.7796 28 1 1.3196 4.3982 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260063954.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = -4.092528 kcal Electronic energy + Delta-G solvation = -12841.451855 eV Core-core repulsion = 10471.751326 eV Total energy + Delta-G solvation = -2369.700528 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.92136 -38.39695 -34.63100 -32.73521 -31.73457 -30.11616 -27.52072 -25.50000 -24.06774 -22.61304 -20.63252 -18.26035 -17.20777 -16.31366 -16.09415 -15.14649 -14.96849 -14.50399 -14.34961 -14.00206 -12.90427 -12.84890 -12.19472 -12.04033 -11.61917 -11.18724 -10.96844 -10.63901 -10.51291 -10.18764 -9.83614 -9.36464 -9.13779 -8.93848 -8.82359 -8.33407 -5.98737 -4.01912 1.25092 1.46160 2.98394 3.32435 3.39820 3.43616 4.09018 4.25305 4.45870 4.51996 5.05737 5.19098 5.19830 5.37267 5.41287 5.50867 5.57871 5.83868 6.28911 6.41684 6.58516 6.91707 7.10039 7.35109 7.67816 7.83910 8.02209 8.38984 8.43786 9.05112 9.61818 11.12476 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.071956 B = 0.005995 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.031611 B = 4669.721331 C = 4821.373002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.353 3.647 4 C -0.251 4.251 5 C 0.224 3.776 6 C -0.071 4.071 7 C 0.032 3.968 8 C -0.523 4.523 9 H 0.058 0.942 10 C 0.057 3.943 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 N -0.528 5.528 17 C 0.329 3.671 18 N -0.592 5.592 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.095 0.905 22 H 0.149 0.851 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.014 0.986 27 H 0.260 0.740 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 -7.510 6.189 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.211 6.211 3 C 0.167 3.833 4 C -0.273 4.273 5 C 0.082 3.918 6 C -0.109 4.109 7 C -0.006 4.006 8 C -0.561 4.561 9 H 0.076 0.924 10 C -0.144 4.144 11 N -0.532 5.532 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 N -0.247 5.247 17 C 0.041 3.959 18 N -0.324 5.324 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.114 0.886 22 H 0.167 0.833 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.830 -6.936 6.044 14.986 hybrid contribution 1.082 -0.496 -0.186 1.205 sum -10.747 -7.432 5.858 14.320 Atomic orbital electron populations 1.22873 0.77241 1.02872 1.02581 1.86224 1.22958 1.24534 1.87357 1.20091 0.89587 0.84806 0.88769 1.21872 0.92337 1.00968 1.12164 1.22189 0.98665 0.86537 0.84362 1.20940 0.84219 1.02537 1.03186 1.19048 0.96027 0.94914 0.90595 1.21253 0.91967 1.31326 1.11555 0.92423 1.25018 0.98244 0.95587 0.95552 1.69988 1.35200 1.33116 1.14848 0.86525 0.85685 0.77829 0.77881 1.19696 1.21058 1.21008 1.68366 1.05680 1.33978 1.16630 1.24692 0.88843 0.93482 0.88857 1.68029 1.41951 0.99357 1.23038 0.92256 0.92176 0.88629 0.83345 0.90900 0.90104 0.94865 0.96793 0.93026 0.78792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.41 101.05 1.05 1.46 15 2 O -0.31 -4.32 10.49 -18.24 -0.19 -4.51 15 3 C 0.35 5.71 7.53 -16.70 -0.13 5.59 15 4 C -0.25 -4.22 9.75 -39.16 -0.38 -4.60 15 5 C 0.22 4.28 6.19 -82.31 -0.51 3.77 15 6 C -0.07 -1.46 5.58 -27.88 -0.16 -1.61 15 7 C 0.03 0.83 4.84 -27.88 -0.14 0.69 15 8 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 15 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 11 N -0.89 -27.03 13.29 55.43 0.74 -26.30 15 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 15 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 16 N -0.53 -10.14 10.04 -10.86 -0.11 -10.25 15 17 C 0.33 5.28 12.28 -92.18 -1.13 4.15 15 18 N -0.59 -9.41 9.39 -14.64 -0.14 -9.55 15 19 H 0.06 0.59 8.12 -51.93 -0.42 0.16 15 20 H 0.06 0.62 8.12 -51.93 -0.42 0.20 15 21 H 0.10 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.15 2.18 8.00 -52.49 -0.42 1.76 15 23 H 0.07 1.37 7.93 -51.93 -0.41 0.96 15 24 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 25 H 0.03 0.94 7.99 -51.93 -0.41 0.52 15 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 15 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 28 H 0.20 2.35 8.06 -52.49 -0.42 1.93 15 LS Contribution 253.93 15.07 3.83 3.83 Total: -1.00 -31.88 253.93 -6.02 -37.90 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -3.32 Total: -3.67 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.80 Total: -4.01 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.49 Total: -46.10 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.19 Total: -4.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.88 -6.02 -37.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063954.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.804 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds