Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35516 * 117.00309 * 2 1 4 4 C 1.39416 * 120.51519 * 180.02562 * 3 2 1 5 5 C 1.38186 * 118.35205 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.41292 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46953 * 124.99837 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72054 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47487 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47233 * 120.00158 * 12 10 8 15 15 H 1.48508 * 109.46883 * 239.99963 * 12 10 8 16 16 N 1.32520 * 119.17793 * 0.24861 * 5 4 3 17 17 C 1.31761 * 120.96334 * 359.48271 * 16 5 4 18 18 N 1.31794 * 121.81323 * 0.53791 * 17 16 5 19 19 H 1.08991 * 109.46787 * 299.99995 * 1 2 3 20 20 H 1.09001 * 109.46895 * 59.99862 * 1 2 3 21 21 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.08002 * 120.82454 * 359.97438 * 4 3 2 23 23 H 1.09000 * 109.46974 * 4.99586 * 6 5 4 24 24 H 1.09001 * 109.46547 * 244.99676 * 6 5 4 25 25 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 26 26 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 27 27 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 28 28 H 1.08002 * 119.09085 * 180.24463 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4358 1.2928 -0.0005 5 6 4.0163 2.5468 0.0000 6 6 5.5163 2.6932 0.0001 7 6 5.9434 3.5667 -1.1812 8 6 7.4433 3.7135 -1.1807 9 1 8.0324 3.2357 -0.4120 10 6 8.0629 4.4622 -2.1588 11 7 7.3451 5.0486 -3.0917 12 14 9.9221 4.6436 -2.1586 13 1 10.4926 3.8929 -1.0115 14 1 10.4724 4.1029 -3.4275 15 1 10.2793 6.0799 -2.0364 16 7 3.2377 3.6192 0.0061 17 6 1.9252 3.5040 0.0013 18 7 1.3310 2.3276 0.0009 19 1 -0.3632 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 4.0450 0.4010 -0.0005 23 1 5.9773 1.7096 -0.0899 24 1 5.8356 3.1604 0.9317 25 1 5.4824 4.5503 -1.0912 26 1 5.6241 3.0995 -2.1128 27 1 7.7810 5.5756 -3.7796 28 1 1.3196 4.3982 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063954.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = -25.797525 kcal Electronic energy + Delta-G solvation = -12842.393054 eV Core-core repulsion = 10471.751326 eV Total energy + Delta-G solvation = -2370.641728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.19692 -39.54900 -36.32550 -34.60251 -33.08289 -31.84163 -28.63811 -27.25138 -25.34517 -24.28615 -22.30942 -19.48970 -18.61862 -18.32406 -17.21264 -16.49329 -16.42366 -16.20790 -15.52032 -15.31895 -14.62545 -14.55001 -14.00568 -13.18459 -12.93152 -12.87452 -12.63897 -12.43131 -12.03720 -11.80434 -11.64690 -11.25066 -10.89566 -10.54865 -10.31345 -10.12488 -8.17392 -6.29108 -0.05509 0.13233 1.43302 1.43800 1.57227 1.88627 2.43471 2.77527 3.06294 3.16402 3.22539 3.82738 4.12509 4.19499 4.40275 4.42681 4.61789 4.68257 4.70836 4.78200 5.05260 5.28502 5.51170 5.68711 5.86499 5.87776 6.12969 6.22498 6.88247 7.12949 7.40196 8.94974 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.071956 B = 0.005995 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.031611 B = 4669.721331 C = 4821.373002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.309 6.309 3 C 0.353 3.647 4 C -0.251 4.251 5 C 0.204 3.796 6 C -0.059 4.059 7 C 0.041 3.959 8 C -0.541 4.541 9 H 0.069 0.931 10 C -0.003 4.003 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.257 1.257 14 H -0.280 1.280 15 H -0.281 1.281 16 N -0.563 5.563 17 C 0.329 3.671 18 N -0.587 5.587 19 H 0.063 0.937 20 H 0.058 0.942 21 H 0.130 0.870 22 H 0.168 0.832 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.000 1.000 26 H -0.017 1.017 27 H 0.263 0.737 28 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 -8.637 6.972 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.214 6.214 3 C 0.166 3.834 4 C -0.273 4.273 5 C 0.063 3.937 6 C -0.097 4.097 7 C 0.003 3.997 8 C -0.579 4.579 9 H 0.087 0.913 10 C -0.200 4.200 11 N -0.575 5.575 12 Si 0.793 3.207 13 H -0.181 1.181 14 H -0.205 1.205 15 H -0.206 1.206 16 N -0.283 5.283 17 C 0.042 3.958 18 N -0.319 5.319 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.148 0.852 22 H 0.186 0.814 23 H 0.110 0.890 24 H 0.103 0.897 25 H 0.018 0.982 26 H 0.001 0.999 27 H 0.071 0.929 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.912 -8.087 6.844 15.942 hybrid contribution 0.949 -0.190 -0.431 1.059 sum -10.964 -8.277 6.414 15.161 Atomic orbital electron populations 1.23208 0.75007 1.05269 1.02684 1.86231 1.25106 1.23263 1.86781 1.20247 0.89665 0.85566 0.87915 1.21963 0.93162 1.00666 1.11554 1.21944 0.97874 0.87681 0.86211 1.20675 0.86004 1.02205 1.00768 1.18816 0.95209 0.94050 0.91632 1.21729 0.93158 1.31218 1.11782 0.91262 1.26023 1.03776 0.95155 0.95084 1.70135 1.37571 1.34048 1.15752 0.85347 0.79031 0.77937 0.78400 1.18090 1.20539 1.20640 1.68318 1.07227 1.34712 1.18014 1.25339 0.88142 0.94736 0.87623 1.68138 1.41671 0.99318 1.22761 0.91865 0.92312 0.85178 0.81440 0.89034 0.89741 0.98179 0.99871 0.92868 0.75477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.41 113.37 1.18 1.76 15 2 O -0.31 -8.03 10.49 -88.19 -0.93 -8.96 15 3 C 0.35 10.84 7.53 84.83 0.64 11.48 15 4 C -0.25 -8.16 9.75 22.54 0.22 -7.94 15 5 C 0.20 7.78 6.19 42.44 0.26 8.05 15 6 C -0.06 -2.43 5.58 29.85 0.17 -2.26 15 7 C 0.04 2.18 4.84 29.85 0.14 2.33 15 8 C -0.54 -30.65 9.11 25.60 0.23 -30.42 15 9 H 0.07 3.67 7.74 -2.91 -0.02 3.65 15 10 C 0.00 -0.16 5.46 84.66 0.46 0.30 15 11 N -0.93 -57.85 13.29 21.45 0.28 -57.57 15 12 Si 0.97 44.25 29.54 68.60 2.03 46.28 15 13 H -0.26 -11.02 7.11 99.48 0.71 -10.32 15 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 16 N -0.56 -21.71 10.04 -188.28 -1.89 -23.61 15 17 C 0.33 10.23 12.28 180.89 2.22 12.45 15 18 N -0.59 -17.76 9.39 -312.90 -2.94 -20.70 15 19 H 0.06 1.09 8.12 -2.39 -0.02 1.07 15 20 H 0.06 1.07 8.12 -2.39 -0.02 1.05 15 21 H 0.13 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.17 4.64 8.00 -2.91 -0.02 4.61 15 23 H 0.09 3.37 7.93 -2.39 -0.02 3.35 15 24 H 0.08 3.36 8.14 -2.39 -0.02 3.34 15 25 H 0.00 -0.01 7.99 -2.39 -0.02 -0.03 15 26 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 15 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 15 28 H 0.23 5.15 8.06 -2.91 -0.02 5.13 15 Total: -1.00 -69.04 253.93 3.23 -65.81 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.15 Total: 3.00 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.53 Total: -4.26 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -4.54 Total: -101.87 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.93 Total: -8.96 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.04 3.23 -65.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063954.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.012 kcal (2) G-P(sol) polarization free energy of solvation -69.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds