Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46931 * 2 1 4 4 N 1.31908 * 120.52621 * 89.99634 * 3 2 1 5 5 C 1.32828 * 121.22550 * 179.97438 * 4 3 2 6 6 N 1.37968 * 118.85344 * 179.97438 * 5 4 3 7 7 N 1.32608 * 122.29015 * 0.25756 * 5 4 3 8 8 C 1.32589 * 120.89086 * 359.47903 * 7 5 4 9 9 N 1.37830 * 120.66040 * 180.25122 * 8 7 5 10 10 C 1.40919 * 120.52448 * 269.97775 * 3 2 1 11 11 C 1.40990 * 121.01956 * 359.97438 * 10 3 2 12 12 H 1.07999 * 119.99726 * 44.12020 * 11 10 3 13 13 C 1.39857 * 120.00072 * 224.12109 * 11 10 3 14 14 N 1.30958 * 120.00150 * 16.62131 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 196.62098 * 13 11 10 16 16 H 1.48498 * 109.46972 * 89.99972 * 15 13 11 17 17 H 1.48499 * 109.47304 * 210.00149 * 15 13 11 18 18 H 1.48502 * 109.46928 * 330.00160 * 15 13 11 19 19 H 1.09000 * 109.47269 * 300.00057 * 1 2 3 20 20 H 1.09006 * 109.46980 * 60.00412 * 1 2 3 21 21 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47567 * 239.99801 * 2 1 3 23 23 H 1.09003 * 109.46532 * 119.99364 * 2 1 3 24 24 H 0.96997 * 120.00715 * 0.02562 * 6 5 4 25 25 H 0.97006 * 119.99438 * 179.72636 * 6 5 4 26 26 H 0.96996 * 119.99971 * 189.13141 * 9 8 7 27 27 H 0.97000 * 119.99518 * 9.13313 * 9 8 7 28 28 H 0.96993 * 119.99761 * 174.95859 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2556 2.0526 1.1363 5 6 2.6988 3.3047 1.1525 6 7 2.9151 3.9187 2.3689 7 7 2.9352 3.9869 0.0402 8 6 2.7455 3.4349 -1.1503 9 7 2.9977 4.1467 -2.3033 10 6 2.2713 2.0956 -1.2139 11 6 2.0484 1.4618 -2.4534 12 1 1.1523 0.8793 -2.6086 13 6 2.9877 1.5875 -3.4820 14 7 4.2007 2.0020 -3.2141 15 14 2.5120 1.1641 -5.2381 16 1 1.9799 2.3754 -5.9126 17 1 3.7075 0.6746 -5.9705 18 1 1.4704 0.1057 -5.2273 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.7442 3.4364 3.1929 25 1 3.2424 4.8313 2.4001 26 1 2.7327 3.7858 -3.1638 27 1 3.4403 5.0084 -2.2542 28 1 4.8726 2.0196 -3.9133 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = 17.977478 kcal Electronic energy + Delta-G solvation = -13741.425395 eV Core-core repulsion = 11404.974645 eV Total energy + Delta-G solvation = -2336.450750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.01153 -36.98873 -36.05829 -34.56403 -32.87615 -31.66105 -30.62669 -26.63418 -24.93024 -23.19912 -21.91153 -19.50356 -18.58059 -18.07769 -16.78356 -16.70556 -15.86551 -15.54722 -15.31230 -15.06899 -14.57231 -14.15708 -13.47647 -13.17027 -12.94848 -12.75411 -12.24463 -12.17094 -12.09121 -11.70540 -11.11273 -10.97603 -10.61274 -9.48520 -9.37619 -8.47969 -8.18450 -6.04201 0.96400 1.23212 1.48933 1.54421 1.59030 2.33670 2.72233 2.93218 3.38497 3.78615 4.03617 4.42882 4.67771 4.74914 4.78077 5.12616 5.12953 5.28668 5.50414 5.53497 5.63781 5.85747 6.30452 6.49286 6.75181 6.77607 7.01341 7.11250 7.18980 7.55575 8.25062 8.60449 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.013646 C = 0.010301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.670159 B = 2051.383547 C = 2717.615874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.043 4.043 3 C 0.098 3.902 4 N -0.607 5.607 5 C 0.500 3.500 6 N -0.827 5.827 7 N -0.644 5.644 8 C 0.416 3.584 9 N -0.807 5.807 10 C -0.091 4.091 11 C -0.483 4.483 12 H 0.076 0.924 13 C 0.033 3.967 14 N -0.846 5.846 15 Si 0.965 3.035 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.264 1.264 19 H 0.044 0.956 20 H 0.042 0.958 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.411 0.589 25 H 0.409 0.591 26 H 0.407 0.593 27 H 0.389 0.611 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 0.386 1.024 3.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.081 4.081 3 C -0.043 4.043 4 N -0.335 5.335 5 C 0.141 3.859 6 N -0.381 5.381 7 N -0.379 5.379 8 C 0.166 3.834 9 N -0.351 5.351 10 C -0.102 4.102 11 C -0.517 4.517 12 H 0.094 0.906 13 C -0.178 4.178 14 N -0.476 5.476 15 Si 0.789 3.211 16 H -0.186 1.186 17 H -0.208 1.208 18 H -0.188 1.188 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.242 0.758 25 H 0.239 0.761 26 H 0.240 0.760 27 H 0.217 0.783 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.850 0.817 1.728 3.432 hybrid contribution 0.289 -0.030 -1.515 1.543 sum -2.561 0.787 0.213 2.687 Atomic orbital electron populations 1.21542 0.93956 1.02057 1.00777 1.20050 0.96515 0.90008 1.01570 1.21635 0.99563 0.96288 0.86826 1.67170 1.24975 1.09563 1.31764 1.18931 0.93879 0.86654 0.86459 1.41038 1.77114 1.17525 1.02392 1.66824 1.33071 1.40297 0.97734 1.18826 0.90910 0.88160 0.85467 1.41579 1.65954 1.22135 1.05438 1.18508 1.04231 0.91842 0.95668 1.18911 1.06255 1.30999 0.95565 0.90646 1.26364 0.94040 0.93872 1.03490 1.69966 1.02739 1.39071 1.35811 0.85440 0.78301 0.79554 0.77853 1.18619 1.20770 1.18841 0.93721 0.93859 0.90287 0.91070 0.91678 0.75817 0.76099 0.76004 0.78309 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.89 71.98 0.71 -3.71 15 2 C -0.04 -1.80 5.84 29.85 0.17 -1.63 15 3 C 0.10 4.89 6.15 43.21 0.27 5.16 15 4 N -0.61 -29.80 10.36 -184.51 -1.91 -31.71 15 5 C 0.50 23.71 8.65 261.51 2.26 25.97 15 6 N -0.83 -29.44 9.04 -59.78 -0.54 -29.98 15 7 N -0.64 -32.17 10.46 -194.21 -2.03 -34.20 15 8 C 0.42 21.45 7.33 134.18 0.98 22.43 15 9 N -0.81 -36.47 7.73 -54.05 -0.42 -36.89 15 10 C -0.09 -4.81 5.31 -20.96 -0.11 -4.92 15 11 C -0.48 -24.47 7.38 23.34 0.17 -24.30 15 12 H 0.08 3.73 7.48 -2.91 -0.02 3.70 15 13 C 0.03 1.56 3.59 85.22 0.31 1.86 15 14 N -0.85 -42.74 11.32 21.82 0.25 -42.49 15 15 Si 0.97 36.77 29.59 68.60 2.03 38.80 15 16 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 17 H -0.28 -10.69 7.11 99.48 0.71 -9.98 15 18 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 19 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.04 1.61 7.84 -2.38 -0.02 1.59 15 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.07 3.06 7.19 -2.39 -0.02 3.04 15 23 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.41 12.54 8.94 -92.71 -0.83 11.72 15 25 H 0.41 12.61 8.94 -92.70 -0.83 11.78 15 26 H 0.41 18.24 6.07 -92.71 -0.56 17.68 15 27 H 0.39 15.65 8.95 -92.71 -0.83 14.82 15 28 H 0.28 13.11 8.31 -92.71 -0.77 12.34 15 Total: -1.00 -60.97 242.08 0.33 -60.64 By element: Atomic # 1 Polarization: 56.78 SS G_CDS: -1.81 Total: 54.96 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 4.76 Total: 20.87 kcal Atomic # 7 Polarization: -170.63 SS G_CDS: -4.65 Total: -175.28 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -60.97 0.33 -60.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.619 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds