Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.38782 * 119.63563 * 179.97438 * 3 2 1 5 5 C 1.38590 * 119.27138 * 179.97438 * 4 3 2 6 6 C 1.38495 * 118.57026 * 0.02562 * 5 4 3 7 7 C 1.38982 * 119.22122 * 359.97438 * 6 5 4 8 8 N 1.39006 * 119.66867 * 179.97438 * 7 6 5 9 9 C 1.46496 * 119.99862 * 0.02562 * 8 7 6 10 10 C 1.50697 * 109.46883 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00260 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00051 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99767 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00296 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47100 * 89.99693 * 14 12 10 16 16 H 1.48498 * 109.47318 * 210.00057 * 14 12 10 17 17 H 1.48501 * 109.47056 * 330.00231 * 14 12 10 18 18 N 1.32318 * 119.63905 * 359.72765 * 3 2 1 19 19 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 20 20 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47352 * 299.99708 * 1 2 3 22 22 H 1.08000 * 120.36472 * 359.96291 * 4 3 2 23 23 H 1.08004 * 120.71679 * 180.02562 * 5 4 3 24 24 H 1.08006 * 120.39050 * 179.97438 * 6 5 4 25 25 H 0.97000 * 119.99978 * 180.02562 * 8 7 6 26 26 H 1.09000 * 109.47272 * 299.99710 * 9 8 7 27 27 H 1.09006 * 109.47491 * 60.00040 * 9 8 7 28 28 H 0.97004 * 119.99407 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4313 1.2727 0.0005 5 6 4.0526 2.5116 0.0000 6 6 3.2623 3.6489 -0.0005 7 6 1.8790 3.5139 -0.0010 8 7 1.0769 4.6492 -0.0010 9 6 1.6904 5.9795 -0.0011 10 6 0.6106 7.0306 -0.0017 11 1 -0.4288 6.7371 -0.0024 12 6 0.9495 8.3671 -0.0023 13 7 2.2151 8.7246 -0.0019 14 14 -0.3890 9.6701 -0.0038 15 1 -0.7445 10.0162 1.3959 16 1 0.1023 10.8838 -0.7044 17 1 -1.5892 9.1461 -0.7041 18 7 1.3173 2.3140 -0.0055 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 4.0195 0.3670 0.0016 23 1 5.1299 2.5884 0.0000 24 1 3.7156 4.6292 -0.0005 25 1 0.1110 4.5605 -0.0010 26 1 2.3092 6.0943 0.8889 27 1 2.3092 6.0943 -0.8911 28 1 2.4534 9.6649 -0.0028 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101486.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -24.703589 kcal Electronic energy + Delta-G solvation = -12923.020786 eV Core-core repulsion = 10552.426495 eV Total energy + Delta-G solvation = -2370.594291 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.44498 -39.11424 -36.65752 -34.61051 -33.14743 -30.80943 -28.82800 -27.68152 -25.14093 -23.74177 -22.83389 -19.41494 -19.00632 -17.84183 -16.93909 -16.76364 -16.73666 -16.16576 -15.47995 -15.28586 -14.64653 -14.21027 -13.97428 -13.92011 -13.04216 -12.88464 -12.80363 -12.57342 -12.22909 -12.15672 -11.48861 -11.11166 -10.72682 -10.60258 -10.08531 -8.43803 -8.32140 -6.45641 0.47191 0.58223 1.41947 1.42720 1.53955 2.11553 2.33599 2.56824 2.97954 3.04345 3.79165 4.21799 4.30309 4.45212 4.45334 4.52295 4.65248 4.79743 4.98142 5.15209 5.25532 5.44497 5.45960 5.57764 5.82456 6.13933 6.29237 6.62750 6.90136 7.17506 7.31308 8.79346 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054409 B = 0.006673 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.497817 B = 4194.773200 C = 4688.823955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.315 6.315 3 C 0.343 3.657 4 C -0.262 4.262 5 C 0.008 3.992 6 C -0.295 4.295 7 C 0.422 3.578 8 N -0.710 5.710 9 C 0.276 3.724 10 C -0.560 4.560 11 H 0.069 0.931 12 C 0.014 3.986 13 N -0.922 5.922 14 Si 0.977 3.023 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.265 1.265 18 N -0.622 5.622 19 H 0.048 0.952 20 H 0.128 0.872 21 H 0.048 0.952 22 H 0.161 0.839 23 H 0.173 0.827 24 H 0.123 0.877 25 H 0.397 0.603 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -12.663 0.017 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.222 6.222 3 C 0.163 3.837 4 C -0.286 4.286 5 C -0.017 4.017 6 C -0.321 4.321 7 C 0.185 3.815 8 N -0.338 5.338 9 C 0.153 3.847 10 C -0.598 4.598 11 H 0.087 0.913 12 C -0.187 4.187 13 N -0.560 5.560 14 Si 0.801 3.199 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.189 1.189 18 N -0.357 5.357 19 H 0.067 0.933 20 H 0.146 0.854 21 H 0.067 0.933 22 H 0.179 0.821 23 H 0.191 0.809 24 H 0.141 0.859 25 H 0.231 0.769 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.473 -12.619 0.007 12.628 hybrid contribution -0.323 1.133 0.010 1.178 sum -0.796 -11.487 0.017 11.514 Atomic orbital electron populations 1.22977 0.76474 1.04432 1.01714 1.86213 1.23908 1.24133 1.87957 1.19801 0.89974 0.83592 0.90291 1.20959 0.91020 1.00147 1.16446 1.21449 1.01325 0.89627 0.89321 1.21449 0.92399 1.01109 1.17118 1.18299 0.89131 0.85240 0.88823 1.45131 1.08279 1.03166 1.77184 1.18721 0.93756 0.77357 0.94848 1.21531 0.93492 0.91598 1.53217 0.91333 1.25851 0.98221 1.00775 0.93837 1.70055 1.18070 1.18180 1.49729 0.85268 0.78523 0.77584 0.78547 1.19694 1.20411 1.18902 1.66565 1.41644 0.97882 1.29572 0.93298 0.85383 0.93288 0.82113 0.80932 0.85914 0.76890 0.97932 0.97940 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.38 113.37 1.18 2.10 15 2 O -0.32 -9.31 10.47 -89.92 -0.94 -10.26 15 3 C 0.34 11.69 7.48 84.75 0.63 12.32 15 4 C -0.26 -7.66 10.04 22.48 0.23 -7.44 15 5 C 0.01 0.22 10.16 22.42 0.23 0.45 15 6 C -0.30 -11.27 9.32 22.51 0.21 -11.06 15 7 C 0.42 17.69 7.65 133.00 1.02 18.71 15 8 N -0.71 -32.22 5.72 -348.87 -2.00 -34.22 15 9 C 0.28 14.35 4.64 85.63 0.40 14.74 15 10 C -0.56 -30.54 9.28 25.60 0.24 -30.30 15 11 H 0.07 3.58 7.60 -2.91 -0.02 3.56 15 12 C 0.01 0.74 5.46 84.66 0.46 1.20 15 13 N -0.92 -52.81 13.29 21.45 0.28 -52.53 15 14 Si 0.98 42.24 29.54 68.60 2.03 44.27 15 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 16 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 18 N -0.62 -24.17 9.24 -306.33 -2.83 -27.00 15 19 H 0.05 1.24 8.10 -2.39 -0.02 1.22 15 20 H 0.13 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.05 1.24 8.11 -2.39 -0.02 1.22 15 22 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 23 H 0.17 3.62 8.06 -2.91 -0.02 3.60 15 24 H 0.12 4.97 6.69 -2.91 -0.02 4.95 15 25 H 0.40 17.32 8.44 -92.71 -0.78 16.54 15 26 H 0.00 0.16 7.92 -2.39 -0.02 0.14 15 27 H 0.00 0.15 7.92 -2.38 -0.02 0.14 15 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 15 Total: -1.00 -61.95 251.34 1.51 -60.43 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.38 Total: 18.57 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 4.59 Total: 0.73 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -4.54 Total: -113.75 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.94 Total: -10.26 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -61.95 1.51 -60.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101486.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.730 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds