Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35745 * 117.00274 * 2 1 4 4 C 1.39493 * 120.80474 * 0.24574 * 3 2 1 5 5 C 1.37798 * 119.25612 * 180.29786 * 4 3 2 6 6 N 1.32057 * 120.91712 * 359.70033 * 5 4 3 7 7 C 1.32489 * 121.75692 * 0.02562 * 6 5 4 8 8 N 1.39026 * 119.67324 * 180.02562 * 7 6 5 9 9 C 1.46501 * 119.99764 * 179.97438 * 8 7 6 10 10 C 1.50690 * 109.47153 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00152 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00356 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99445 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00242 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47434 * 89.99736 * 14 12 10 16 16 H 1.48505 * 109.47149 * 209.99613 * 14 12 10 17 17 H 1.48503 * 109.47114 * 329.99386 * 14 12 10 18 18 C 1.38904 * 120.64822 * 359.97438 * 7 6 5 19 19 H 1.09004 * 109.46787 * 300.00391 * 1 2 3 20 20 H 1.09007 * 109.46883 * 59.99921 * 1 2 3 21 21 H 1.08996 * 109.47487 * 179.97438 * 1 2 3 22 22 H 1.08001 * 120.36708 * 0.02562 * 4 3 2 23 23 H 1.08003 * 119.54250 * 179.72011 * 5 4 3 24 24 H 0.96994 * 120.00220 * 359.97438 * 8 7 6 25 25 H 1.09000 * 109.47122 * 300.00404 * 9 8 7 26 26 H 1.09003 * 109.47402 * 59.99613 * 9 8 7 27 27 H 0.97000 * 119.99395 * 179.97438 * 13 12 10 28 28 H 1.08002 * 120.48223 * 179.97438 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3022 2.3899 0.0051 5 6 1.9608 3.6003 -0.0013 6 7 3.2802 3.6549 -0.0062 7 6 4.0234 2.5581 -0.0058 8 7 5.4095 2.6660 -0.0106 9 6 6.2382 1.4579 -0.0096 10 6 7.6939 1.8473 -0.0149 11 1 7.9739 2.8904 -0.0182 12 6 8.6686 0.8719 -0.0155 13 7 8.3276 -0.3983 -0.0109 14 14 10.4730 1.3547 -0.0213 15 1 10.9550 1.4856 1.3772 16 1 11.2628 0.3098 -0.7212 17 1 10.6360 2.6524 -0.7246 18 6 3.4314 1.3015 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 0.2228 2.3555 0.0096 23 1 1.3899 4.5172 -0.0019 24 1 5.8278 3.5410 -0.0147 25 1 6.0228 0.8703 0.8829 26 1 6.0171 0.8648 -0.8970 27 1 9.0133 -1.0844 -0.0117 28 1 4.0399 0.4092 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260109689.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = -25.780985 kcal Electronic energy + Delta-G solvation = -12909.916141 eV Core-core repulsion = 10539.275131 eV Total energy + Delta-G solvation = -2370.641011 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.43758 -39.35203 -36.83249 -34.61429 -32.37871 -31.13524 -28.80324 -27.90131 -25.26891 -23.77259 -22.65622 -19.72732 -18.63767 -17.84860 -16.80400 -16.73860 -16.64852 -16.16343 -15.64783 -15.40316 -14.79319 -14.55909 -14.05924 -13.94981 -13.29498 -12.84135 -12.77985 -12.44148 -12.26797 -12.00982 -11.49049 -11.18193 -10.60624 -10.44491 -9.82394 -8.58204 -8.32467 -6.47083 0.43995 0.58653 1.41489 1.43230 1.54630 2.15762 2.34115 2.64250 2.99928 3.04746 3.82312 4.05594 4.22634 4.34866 4.43725 4.43828 4.64531 4.79042 4.93175 4.99585 5.21672 5.23356 5.45280 5.61986 5.83657 6.13004 6.39268 6.62525 6.93684 7.21519 7.38668 8.79450 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.053045 B = 0.006746 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.731298 B = 4149.363311 C = 4656.644932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.201 3.799 4 C -0.321 4.321 5 C 0.179 3.821 6 N -0.592 5.592 7 C 0.419 3.581 8 N -0.707 5.707 9 C 0.275 3.725 10 C -0.560 4.560 11 H 0.073 0.927 12 C 0.010 3.990 13 N -0.925 5.925 14 Si 0.981 3.019 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.262 1.262 18 C -0.311 4.311 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.119 0.881 22 H 0.172 0.828 23 H 0.197 0.803 24 H 0.401 0.599 25 H -0.003 1.003 26 H -0.003 1.003 27 H 0.270 0.730 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 3.869 0.017 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.147 3.853 4 C -0.345 4.345 5 C 0.020 3.980 6 N -0.314 5.314 7 C 0.183 3.817 8 N -0.335 5.335 9 C 0.152 3.848 10 C -0.598 4.598 11 H 0.091 0.909 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.805 3.195 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.338 4.338 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.138 0.862 22 H 0.189 0.811 23 H 0.214 0.786 24 H 0.237 0.763 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.079 0.921 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.053 4.033 0.011 14.621 hybrid contribution 0.622 -0.730 0.007 0.959 sum -13.432 3.303 0.018 13.832 Atomic orbital electron populations 1.23461 0.75412 1.05822 1.03000 1.86041 1.24488 1.26634 1.87623 1.19058 0.90902 0.85635 0.89655 1.22089 1.02385 0.91576 1.18413 1.22882 0.88045 0.98692 0.88353 1.67328 1.08807 1.29942 1.25344 1.18344 0.85984 0.88758 0.88595 1.45045 1.01139 1.10288 1.77040 1.18684 0.89194 0.82489 0.94409 1.21548 0.90831 0.94190 1.53208 0.90918 1.25940 1.04796 0.94497 0.93751 1.70085 1.35804 1.00710 1.49773 0.85204 0.77379 0.78322 0.78630 1.19564 1.20427 1.18624 1.20586 0.93791 0.97676 1.21704 0.90908 0.90928 0.86240 0.81102 0.78625 0.76331 0.98530 0.98514 0.92068 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.84 113.37 1.12 1.41 15 2 O -0.34 -10.36 10.51 -90.70 -0.95 -11.32 15 3 C 0.20 6.94 6.73 22.73 0.15 7.10 15 4 C -0.32 -8.54 9.10 22.47 0.20 -8.34 15 5 C 0.18 5.05 11.17 84.55 0.94 5.99 15 6 N -0.59 -22.36 10.39 -193.48 -2.01 -24.37 15 7 C 0.42 18.30 7.65 132.97 1.02 19.32 15 8 N -0.71 -33.46 5.72 -348.92 -2.00 -35.45 15 9 C 0.28 15.10 4.64 85.63 0.40 15.49 15 10 C -0.56 -31.48 9.28 25.60 0.24 -31.24 15 11 H 0.07 3.87 7.60 -2.91 -0.02 3.85 15 12 C 0.01 0.58 5.46 84.66 0.46 1.04 15 13 N -0.93 -54.96 13.29 21.45 0.28 -54.67 15 14 Si 0.98 43.22 29.54 68.60 2.03 45.24 15 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.26 -11.04 7.11 99.48 0.71 -10.34 15 18 C -0.31 -13.39 9.29 22.59 0.21 -13.18 15 19 H 0.07 1.02 7.70 -2.38 -0.02 1.00 15 20 H 0.07 1.02 7.72 -2.38 -0.02 1.00 15 21 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.17 2.98 6.46 -2.91 -0.02 2.96 15 23 H 0.20 3.58 8.06 -2.91 -0.02 3.56 15 24 H 0.40 17.92 8.44 -92.71 -0.78 17.13 15 25 H 0.00 -0.19 7.93 -2.39 -0.02 -0.20 15 26 H 0.00 -0.18 7.93 -2.39 -0.02 -0.19 15 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 28 H 0.11 5.28 6.70 -2.91 -0.02 5.26 15 Total: -1.00 -67.81 248.89 2.48 -65.33 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.39 Total: 17.66 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 4.74 Total: -2.42 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -3.72 Total: -114.49 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.95 Total: -11.32 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.81 2.48 -65.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109689.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.546 kcal (2) G-P(sol) polarization free energy of solvation -67.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds