Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46825 * 2 1 4 4 F 1.39891 * 109.47404 * 120.00839 * 2 1 3 5 5 C 1.50706 * 109.46850 * 240.00408 * 2 1 3 6 6 C 1.38228 * 119.99983 * 295.21203 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21781 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 C 1.50701 * 109.46833 * 89.99861 * 9 8 7 11 11 H 1.08001 * 120.00342 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00009 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99884 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00069 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47135 * 90.00375 * 14 12 10 16 16 H 1.48494 * 109.47213 * 210.00628 * 14 12 10 17 17 H 1.48507 * 109.47029 * 330.00073 * 14 12 10 18 18 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 19 19 C 1.38234 * 119.99892 * 114.99423 * 5 2 1 20 20 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46556 * 299.99228 * 1 2 3 22 22 H 1.08997 * 109.47105 * 59.99440 * 1 2 3 23 23 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 24 24 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 25 25 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 26 26 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 27 27 H 0.96998 * 119.99939 * 179.97438 * 13 12 10 28 28 H 1.07996 * 120.00471 * 179.97438 * 18 8 7 29 29 H 1.08001 * 120.00324 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6596 1.1421 5 6 2.0323 -0.7104 -1.2306 6 6 1.7819 -2.0591 -1.4007 7 6 2.2465 -2.7117 -2.5273 8 6 2.9530 -2.0133 -3.4885 9 6 3.4545 -2.7234 -4.7195 10 6 2.4070 -2.6548 -5.8007 11 1 1.4718 -2.1474 -5.6152 12 6 2.6429 -3.2389 -7.0272 13 7 3.7818 -3.8563 -7.2533 14 14 1.3447 -3.1533 -8.3677 15 1 1.5582 -1.9328 -9.1862 16 1 1.4480 -4.3548 -9.2342 17 1 -0.0040 -3.1043 -7.7482 18 6 3.2000 -0.6636 -3.3203 19 6 2.7396 -0.0121 -2.1914 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.2259 -2.6038 -0.6519 24 1 2.0536 -3.7662 -2.6587 25 1 4.3689 -2.2437 -5.0684 26 1 3.6603 -3.7663 -4.4788 27 1 3.9476 -4.2675 -8.1160 28 1 3.7523 -0.1180 -4.0711 29 1 2.9326 1.0423 -2.0600 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159014.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = -49.442236 kcal Electronic energy + Delta-G solvation = -12862.734900 eV Core-core repulsion = 10471.147899 eV Total energy + Delta-G solvation = -2391.587001 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.50703 -38.74705 -34.09451 -32.53780 -30.38776 -30.12548 -26.93490 -23.97311 -22.31767 -21.77740 -19.92380 -16.54080 -16.30057 -16.16468 -14.95033 -14.91767 -14.24308 -14.12371 -13.53818 -12.90542 -12.77510 -12.50985 -12.28534 -11.98504 -11.38913 -11.34471 -11.03093 -10.83106 -10.65769 -10.43129 -10.24896 -9.56537 -9.48238 -8.45970 -8.34000 -7.85566 -6.07643 -4.11830 1.92142 1.99978 3.28165 3.34528 3.38517 4.29990 4.47589 4.66008 4.76214 4.93532 5.20973 5.26889 5.45406 5.51575 5.65445 5.88745 5.94328 6.03421 6.19646 6.24186 6.57227 6.61493 7.00706 7.11716 7.13142 7.46080 7.65961 7.80053 7.88009 8.27510 8.93310 9.52172 11.02324 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.056439 B = 0.006707 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.987593 B = 4173.829944 C = 4329.549511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.139 3.861 3 H 0.083 0.917 4 F -0.215 7.215 5 C -0.162 4.162 6 C -0.098 4.098 7 C -0.126 4.126 8 C -0.024 4.024 9 C 0.045 3.955 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.126 4.126 19 C -0.105 4.105 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.121 0.879 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 6.812 11.097 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.101 0.899 4 F -0.196 7.196 5 C -0.162 4.162 6 C -0.116 4.116 7 C -0.144 4.144 8 C -0.024 4.024 9 C 0.008 3.992 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.144 4.144 19 C -0.123 4.123 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.131 0.869 24 H 0.138 0.862 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.265 6.693 10.992 13.558 hybrid contribution -0.649 -0.042 -0.816 1.044 sum -4.914 6.652 10.175 13.112 Atomic orbital electron populations 1.22371 0.94061 1.03716 1.02982 1.20266 0.94495 0.94939 0.80035 0.89856 1.92810 1.90398 1.83626 1.52729 1.19868 1.04090 0.95205 0.97085 1.20813 0.99564 0.93654 0.97588 1.21093 0.99221 1.00247 0.93820 1.20788 0.92351 0.93712 0.95529 1.18397 0.96712 0.95456 0.88598 1.21039 1.01809 1.35530 0.96717 0.92459 1.25014 0.95634 0.95139 0.98523 1.69953 1.23437 1.36163 1.23680 0.86521 0.81906 0.77578 0.81621 1.20565 1.21124 1.19792 1.21072 1.01383 0.94840 0.97152 1.20856 0.98108 0.98901 0.94437 0.91319 0.91759 0.90564 0.86947 0.86176 0.95208 0.95197 0.92786 0.86144 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.51 37.16 0.35 -1.56 15 2 C 0.14 1.82 4.18 -27.88 -0.12 1.70 15 3 H 0.08 0.92 7.89 -51.93 -0.41 0.51 15 4 F -0.21 -3.21 16.94 2.25 0.04 -3.17 15 5 C -0.16 -2.61 5.05 -104.62 -0.53 -3.13 15 6 C -0.10 -1.69 9.15 -39.59 -0.36 -2.05 15 7 C -0.13 -2.48 9.70 -39.58 -0.38 -2.87 15 8 C -0.02 -0.52 5.07 -104.62 -0.53 -1.05 15 9 C 0.05 1.16 5.10 -29.03 -0.15 1.01 15 10 C -0.51 -14.29 9.09 -34.44 -0.31 -14.61 15 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 13 N -0.89 -26.28 13.29 55.43 0.74 -25.54 15 14 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 18 C -0.13 -2.45 9.70 -39.58 -0.38 -2.83 15 19 C -0.10 -1.73 9.67 -39.58 -0.38 -2.11 15 20 H 0.07 0.78 7.68 -51.93 -0.40 0.38 15 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.11 1.71 7.87 -52.48 -0.41 1.29 15 24 H 0.12 2.30 8.06 -52.49 -0.42 1.87 15 25 H 0.03 0.80 8.08 -51.93 -0.42 0.38 15 26 H 0.03 0.80 8.09 -51.93 -0.42 0.38 15 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 28 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 29 H 0.11 1.51 7.95 -52.49 -0.42 1.09 15 LS Contribution 258.77 15.07 3.90 3.90 Total: -1.00 -29.57 258.77 -6.95 -36.52 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.71 Total: -2.14 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -2.89 Total: -25.95 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.57 -6.95 -36.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159014.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.919 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds