Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46825 * 2 1 4 4 F 1.39891 * 109.47404 * 120.00839 * 2 1 3 5 5 C 1.50706 * 109.46850 * 240.00408 * 2 1 3 6 6 C 1.38228 * 119.99983 * 295.21203 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21781 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 C 1.50701 * 109.46833 * 89.99861 * 9 8 7 11 11 H 1.08001 * 120.00342 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00009 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99884 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00069 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47135 * 90.00375 * 14 12 10 16 16 H 1.48494 * 109.47213 * 210.00628 * 14 12 10 17 17 H 1.48507 * 109.47029 * 330.00073 * 14 12 10 18 18 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 19 19 C 1.38234 * 119.99892 * 114.99423 * 5 2 1 20 20 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46556 * 299.99228 * 1 2 3 22 22 H 1.08997 * 109.47105 * 59.99440 * 1 2 3 23 23 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 24 24 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 25 25 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 26 26 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 27 27 H 0.96998 * 119.99939 * 179.97438 * 13 12 10 28 28 H 1.07996 * 120.00471 * 179.97438 * 18 8 7 29 29 H 1.08001 * 120.00324 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6596 1.1421 5 6 2.0323 -0.7104 -1.2306 6 6 1.7819 -2.0591 -1.4007 7 6 2.2465 -2.7117 -2.5273 8 6 2.9530 -2.0133 -3.4885 9 6 3.4545 -2.7234 -4.7195 10 6 2.4070 -2.6548 -5.8007 11 1 1.4718 -2.1474 -5.6152 12 6 2.6429 -3.2389 -7.0272 13 7 3.7818 -3.8563 -7.2533 14 14 1.3447 -3.1533 -8.3677 15 1 1.5582 -1.9328 -9.1862 16 1 1.4480 -4.3548 -9.2342 17 1 -0.0040 -3.1043 -7.7482 18 6 3.2000 -0.6636 -3.3203 19 6 2.7396 -0.0121 -2.1914 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.2259 -2.6038 -0.6519 24 1 2.0536 -3.7662 -2.6587 25 1 4.3689 -2.2437 -5.0684 26 1 3.6603 -3.7663 -4.4788 27 1 3.9476 -4.2675 -8.1160 28 1 3.7523 -0.1180 -4.0711 29 1 2.9326 1.0423 -2.0600 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159014.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = -64.847643 kcal Electronic energy + Delta-G solvation = -12863.402928 eV Core-core repulsion = 10471.147899 eV Total energy + Delta-G solvation = -2392.255030 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.59233 -40.19790 -35.81434 -34.23339 -31.81454 -31.62238 -28.61806 -25.64461 -23.80076 -23.20639 -21.35919 -18.54470 -17.74395 -17.28581 -16.72891 -15.96155 -15.87304 -15.55960 -14.94658 -14.54561 -14.25312 -13.78020 -13.70189 -13.31055 -13.05652 -12.95333 -12.63058 -12.55525 -12.09417 -11.92241 -11.66700 -11.53251 -11.28112 -10.62828 -9.77147 -9.41850 -8.22562 -6.36294 0.46781 0.55793 1.39162 1.40240 1.51799 2.38137 2.91417 3.08463 3.53193 3.77600 3.92934 4.17798 4.21526 4.30476 4.34232 4.65687 4.66699 4.84664 5.05444 5.07668 5.14449 5.23049 5.31941 5.36786 5.57217 5.63620 5.72235 6.04046 6.07897 6.21651 6.76248 7.32562 8.87111 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.056439 B = 0.006707 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.987593 B = 4173.829944 C = 4329.549511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 H 0.114 0.886 4 F -0.225 7.225 5 C -0.154 4.154 6 C -0.097 4.097 7 C -0.140 4.140 8 C -0.058 4.058 9 C 0.054 3.946 10 C -0.530 4.530 11 H 0.055 0.945 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.968 3.032 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.138 4.138 19 C -0.095 4.095 20 H 0.061 0.939 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.134 0.866 24 H 0.113 0.887 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.266 0.734 28 H 0.119 0.881 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 8.620 12.199 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.101 3.899 3 H 0.132 0.868 4 F -0.206 7.206 5 C -0.154 4.154 6 C -0.115 4.115 7 C -0.158 4.158 8 C -0.058 4.058 9 C 0.017 3.983 10 C -0.568 4.568 11 H 0.073 0.927 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.156 4.156 19 C -0.113 4.113 20 H 0.080 0.920 21 H 0.105 0.895 22 H 0.101 0.899 23 H 0.152 0.848 24 H 0.131 0.869 25 H 0.023 0.977 26 H 0.020 0.980 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.921 8.507 12.108 15.938 hybrid contribution -0.113 -0.576 -1.060 1.212 sum -6.034 7.930 11.048 14.878 Atomic orbital electron populations 1.22374 0.92310 1.03795 1.04470 1.20504 0.95847 0.95628 0.77890 0.86785 1.92798 1.90660 1.84025 1.53102 1.20345 1.02236 0.94781 0.98036 1.21038 0.99069 0.94571 0.96813 1.21091 0.99841 1.00171 0.94676 1.20505 0.95211 0.95067 0.95039 1.18133 0.95566 0.94098 0.90492 1.21356 1.02135 1.35522 0.97745 0.92678 1.25952 0.97864 0.94538 1.01059 1.70079 1.25448 1.36985 1.24501 0.85405 0.79095 0.77947 0.78371 1.19542 1.20487 1.18977 1.21146 1.01950 0.93909 0.98602 1.21209 0.96515 1.00710 0.92825 0.92018 0.89537 0.89875 0.84817 0.86892 0.97697 0.97979 0.92505 0.86302 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.51 71.98 0.68 -2.40 15 2 C 0.14 3.01 4.18 29.85 0.12 3.14 15 3 H 0.11 1.88 7.89 -2.39 -0.02 1.86 15 4 F -0.22 -5.94 16.94 44.97 0.76 -5.17 15 5 C -0.15 -4.48 5.05 -19.87 -0.10 -4.58 15 6 C -0.10 -3.19 9.15 22.27 0.20 -2.99 15 7 C -0.14 -5.61 9.70 22.27 0.22 -5.39 15 8 C -0.06 -2.61 5.07 -19.87 -0.10 -2.71 15 9 C 0.05 2.94 5.10 29.10 0.15 3.09 15 10 C -0.53 -30.48 9.09 25.60 0.23 -30.25 15 11 H 0.05 3.11 7.74 -2.91 -0.02 3.09 15 12 C 0.00 0.23 5.46 84.66 0.46 0.70 15 13 N -0.93 -56.33 13.29 21.45 0.28 -56.04 15 14 Si 0.97 44.23 29.54 68.60 2.03 46.25 15 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 18 C -0.14 -5.31 9.70 22.27 0.22 -5.09 15 19 C -0.09 -2.86 9.67 22.27 0.22 -2.64 15 20 H 0.06 1.20 7.68 -2.39 -0.02 1.18 15 21 H 0.09 1.20 8.14 -2.38 -0.02 1.18 15 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.13 3.77 7.87 -2.91 -0.02 3.75 15 24 H 0.11 4.53 8.06 -2.91 -0.02 4.51 15 25 H 0.00 0.27 8.08 -2.39 -0.02 0.25 15 26 H 0.00 0.11 8.09 -2.39 -0.02 0.09 15 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 28 H 0.12 4.48 8.06 -2.91 -0.02 4.46 15 29 H 0.15 3.37 7.95 -2.91 -0.02 3.35 15 Total: -1.00 -65.08 258.77 6.50 -58.58 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.12 Total: 5.53 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 2.30 Total: -49.14 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.76 Total: -5.17 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.08 6.50 -58.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159014.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.267 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds