Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47422 * 2 1 4 4 C 1.50704 * 109.47240 * 239.99463 * 2 1 3 5 5 H 1.08002 * 119.99931 * 240.00197 * 4 2 1 6 6 C 1.37870 * 119.99794 * 60.00088 * 4 2 1 7 7 N 1.31516 * 120.00352 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46869 * 59.99831 * 8 6 4 10 10 H 1.48494 * 109.47306 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46919 * 300.00113 * 8 6 4 12 12 C 1.50706 * 109.47041 * 119.99589 * 2 1 3 13 13 C 1.38228 * 119.99983 * 60.21359 * 12 2 1 14 14 C 1.38238 * 120.00110 * 180.21781 * 13 12 2 15 15 C 1.38234 * 119.99675 * 359.52133 * 14 13 12 16 16 C 1.50702 * 120.00257 * 180.25732 * 15 14 13 17 17 F 1.39902 * 109.46957 * 90.00122 * 16 15 14 18 18 C 1.38235 * 120.00220 * 0.28720 * 15 14 13 19 19 C 1.38234 * 119.99892 * 239.99579 * 12 2 1 20 20 H 1.08995 * 109.47167 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47082 * 300.00357 * 1 2 3 22 22 H 1.08997 * 109.46911 * 60.00404 * 1 2 3 23 23 H 0.96995 * 120.00626 * 180.02562 * 7 6 4 24 24 H 1.08004 * 120.00281 * 0.02562 * 13 12 2 25 25 H 1.08002 * 120.00519 * 179.80752 * 14 13 12 26 26 H 1.08993 * 109.47429 * 210.00613 * 16 15 14 27 27 H 1.08998 * 109.46961 * 330.00864 * 16 15 14 28 28 H 1.07996 * 120.00471 * 179.97438 * 18 15 14 29 29 H 1.08001 * 120.00324 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5206 -4.0075 10 1 1.8260 -0.4210 -5.2203 11 1 3.8064 -1.1212 -4.0080 12 6 2.0323 -0.7104 1.2306 13 6 1.7020 -2.0350 1.4472 14 6 2.1591 -2.6853 2.5782 15 6 2.9546 -2.0137 3.4876 16 6 3.4577 -2.7242 4.7177 17 9 4.6898 -3.3250 4.4380 18 6 3.2882 -0.6902 3.2690 19 6 2.8271 -0.0385 2.1404 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7090 1.1611 -3.4844 24 1 1.0843 -2.5611 0.7343 25 1 1.8985 -3.7194 2.7490 26 1 3.5794 -2.0057 5.5281 27 1 2.7398 -3.4888 5.0147 28 1 3.9094 -0.1653 3.9796 29 1 3.0878 0.9956 1.9696 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206508.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -59.969020 kcal Electronic energy + Delta-G solvation = -13036.556734 eV Core-core repulsion = 10644.513257 eV Total energy + Delta-G solvation = -2392.043477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.51217 -40.23707 -36.42943 -33.72166 -31.78307 -31.04826 -27.27435 -26.81538 -23.71335 -23.12733 -21.18324 -18.33795 -17.55778 -16.89362 -16.78099 -16.65605 -15.84045 -15.44779 -14.97405 -14.58880 -14.22386 -13.75156 -13.67234 -13.27318 -12.83293 -12.65814 -12.41915 -12.24999 -12.03506 -11.96398 -11.66431 -11.18318 -11.03488 -10.48834 -9.73315 -9.39731 -8.11816 -6.26152 0.49745 0.59322 1.41086 1.41813 1.49889 2.41308 2.94318 3.16091 3.71173 3.91499 4.10476 4.26276 4.28782 4.35729 4.70942 4.79370 4.84189 4.85621 4.98684 5.13722 5.26790 5.27602 5.50825 5.60572 5.63034 5.68361 6.02683 6.08493 6.21688 6.35308 6.81949 7.41797 8.92506 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.045861 B = 0.007803 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.396700 B = 3587.535810 C = 3870.258672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.067 3.933 3 H 0.005 0.995 4 C -0.524 4.524 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.051 4.051 13 C -0.130 4.130 14 C -0.101 4.101 15 C -0.167 4.167 16 C 0.112 3.888 17 F -0.232 7.232 18 C -0.097 4.097 19 C -0.149 4.149 20 H 0.032 0.968 21 H 0.025 0.975 22 H 0.060 0.940 23 H 0.263 0.737 24 H 0.113 0.887 25 H 0.143 0.857 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.146 0.854 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -5.391 12.348 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 H 0.023 0.977 4 C -0.562 4.562 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.200 1.200 12 C -0.051 4.051 13 C -0.149 4.149 14 C -0.119 4.119 15 C -0.167 4.167 16 C 0.058 3.942 17 F -0.213 7.213 18 C -0.115 4.115 19 C -0.167 4.167 20 H 0.051 0.949 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.131 0.869 25 H 0.161 0.839 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.164 0.836 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.220 -5.291 12.210 13.491 hybrid contribution 0.182 -0.039 -1.359 1.372 sum 2.401 -5.329 10.851 12.325 Atomic orbital electron populations 1.21614 0.97194 0.99274 0.99748 1.17797 0.93347 0.94015 0.89946 0.97703 1.21338 1.31284 1.12356 0.91222 0.93293 1.25706 0.95202 0.95687 1.01743 1.69995 1.37451 1.23944 1.24158 0.85670 0.78683 0.78901 0.78783 1.19510 1.20685 1.19980 1.20564 0.94509 0.94846 0.95146 1.21064 1.01451 0.94494 0.97849 1.21263 0.97048 1.00186 0.93360 1.20418 1.01812 0.95293 0.99180 1.20960 0.81253 0.97700 0.94290 1.92762 1.47299 1.85799 1.95486 1.21232 0.98749 0.94406 0.97081 1.21242 0.99683 1.00442 0.95325 0.94900 0.95598 0.92148 0.92821 0.86939 0.83939 0.87517 0.87702 0.83610 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.79 71.98 0.63 -5.29 15 2 C 0.07 3.47 2.48 -12.28 -0.03 3.44 15 3 H 0.00 0.27 7.88 -2.39 -0.02 0.25 15 4 C -0.52 -29.24 8.24 25.60 0.21 -29.03 15 5 H 0.05 2.74 7.59 -2.91 -0.02 2.71 15 6 C 0.02 0.86 5.30 84.65 0.45 1.31 15 7 N -0.92 -52.90 11.32 21.44 0.24 -52.66 15 8 Si 0.95 43.91 29.54 68.60 2.03 45.94 15 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 15 12 C -0.05 -2.22 4.74 -19.87 -0.09 -2.31 15 13 C -0.13 -5.16 8.70 22.27 0.19 -4.96 15 14 C -0.10 -3.19 9.70 22.27 0.22 -2.97 15 15 C -0.17 -4.78 5.60 -19.87 -0.11 -4.90 15 16 C 0.11 2.30 7.67 71.24 0.55 2.85 15 17 F -0.23 -6.19 17.34 44.97 0.78 -5.41 15 18 C -0.10 -2.97 9.70 22.27 0.22 -2.75 15 19 C -0.15 -5.66 9.67 22.27 0.22 -5.45 15 20 H 0.03 1.53 7.40 -2.39 -0.02 1.51 15 21 H 0.02 1.12 8.14 -2.39 -0.02 1.10 15 22 H 0.06 3.26 6.07 -2.39 -0.01 3.25 15 23 H 0.26 14.42 8.31 -92.71 -0.77 13.65 15 24 H 0.11 4.58 7.59 -2.91 -0.02 4.56 15 25 H 0.14 3.59 8.06 -2.91 -0.02 3.56 15 26 H 0.11 1.59 8.08 -2.39 -0.02 1.57 15 27 H 0.10 1.60 8.09 -2.39 -0.02 1.58 15 28 H 0.15 3.44 8.06 -2.91 -0.02 3.42 15 29 H 0.12 4.33 7.95 -2.91 -0.02 4.30 15 Total: -1.00 -62.33 253.32 6.62 -55.71 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.13 Total: 6.47 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 2.44 Total: -50.06 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.66 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.78 Total: -5.41 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -62.33 6.62 -55.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206508.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.258 kcal (2) G-P(sol) polarization free energy of solvation -62.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds