Wall clock time and date at job start Mon Mar 30 2020 02:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47441 * 2 1 4 4 F 1.39907 * 109.46928 * 119.99563 * 2 1 3 5 5 C 1.50691 * 109.47448 * 239.99525 * 2 1 3 6 6 C 1.38254 * 120.00360 * 295.02622 * 5 2 1 7 7 C 1.38219 * 120.00287 * 179.97438 * 6 5 2 8 8 C 1.38254 * 119.99918 * 359.70340 * 7 6 5 9 9 C 1.38212 * 119.99692 * 0.55252 * 8 7 6 10 10 C 1.50700 * 119.99804 * 179.74655 * 9 8 7 11 11 C 1.50706 * 109.47062 * 269.72032 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.38215 * 120.00217 * 115.00036 * 5 2 1 20 20 H 1.09000 * 109.47441 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47333 * 300.00659 * 1 2 3 22 22 H 1.09000 * 109.46787 * 59.99720 * 1 2 3 23 23 H 1.08001 * 119.99945 * 359.97438 * 6 5 2 24 24 H 1.08002 * 119.99672 * 179.97438 * 7 6 5 25 25 H 1.07997 * 120.00064 * 180.29773 * 8 7 6 26 26 H 1.09004 * 109.47406 * 149.72738 * 10 9 8 27 27 H 1.08993 * 109.47274 * 29.72364 * 10 9 8 28 28 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 29 29 H 1.08009 * 119.99624 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6594 1.1424 5 6 2.0323 -0.7104 -1.2303 6 6 1.7853 -2.0603 -1.3985 7 6 2.2457 -2.7118 -2.5272 8 6 2.9479 -2.0123 -3.4910 9 6 3.1994 -0.6640 -3.3204 10 6 3.9698 0.0972 -4.3683 11 6 5.4412 0.0456 -4.0465 12 1 5.7841 -0.4857 -3.1710 13 6 6.3496 0.6757 -4.8703 14 7 5.9326 1.3173 -5.9399 15 14 8.1735 0.6111 -4.4718 16 1 8.9333 1.3552 -5.5082 17 1 8.4120 1.2302 -3.1431 18 1 8.6249 -0.8033 -4.4470 19 6 2.7397 -0.0125 -2.1910 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.2326 -2.6057 -0.6478 24 1 2.0530 -3.7664 -2.6583 25 1 3.3034 -2.5203 -4.3753 26 1 3.6371 1.1351 -4.3815 27 1 3.7956 -0.3526 -5.3457 28 1 4.9856 1.3507 -6.1470 29 1 2.9327 1.0420 -2.0597 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:01 Heat of formation + Delta-G solvation = -69.195694 kcal Electronic energy + Delta-G solvation = -12969.934873 eV Core-core repulsion = 10577.491298 eV Total energy + Delta-G solvation = -2392.443575 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.67636 -40.30626 -36.04005 -34.32706 -32.74172 -30.47864 -28.53414 -25.39329 -24.74702 -23.02932 -21.23109 -19.00738 -17.71478 -17.33351 -16.67378 -16.06185 -15.71597 -15.68609 -15.48382 -14.78603 -14.09613 -13.80401 -13.45924 -13.36934 -13.17228 -12.97590 -12.81141 -12.50677 -12.06551 -11.95901 -11.63792 -11.54241 -11.01197 -10.61043 -9.80744 -9.52500 -8.70658 -6.45317 0.34682 0.50466 1.50727 1.58412 1.78743 2.52046 2.82498 3.09997 3.41432 3.69354 3.86155 4.08336 4.16105 4.22058 4.24920 4.52693 4.60296 4.75143 4.85396 4.96415 5.02129 5.14078 5.16541 5.19808 5.51045 5.56645 5.86576 5.88213 6.08159 6.10828 6.50999 7.34664 8.66563 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.007568 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.071512 B = 3699.138313 C = 3889.404362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 H 0.096 0.904 4 F -0.221 7.221 5 C -0.127 4.127 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.132 4.132 9 C -0.065 4.065 10 C 0.041 3.959 11 C -0.606 4.606 12 H 0.043 0.957 13 C -0.033 4.033 14 N -0.933 5.933 15 Si 1.117 2.883 16 H -0.279 1.279 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.120 4.120 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.146 0.854 24 H 0.152 0.848 25 H 0.115 0.885 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.257 0.743 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 -4.849 10.681 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.095 3.905 3 H 0.114 0.886 4 F -0.202 7.202 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.150 4.150 9 C -0.065 4.065 10 C 0.004 3.996 11 C -0.644 4.644 12 H 0.062 0.938 13 C -0.231 4.231 14 N -0.570 5.570 15 Si 0.938 3.062 16 H -0.205 1.205 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.138 4.138 20 H 0.092 0.908 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.164 0.836 24 H 0.170 0.830 25 H 0.133 0.867 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.576 -4.374 10.193 14.021 hybrid contribution -1.344 -0.294 0.048 1.377 sum -9.921 -4.668 10.241 15.002 Atomic orbital electron populations 1.22332 0.91137 1.04420 1.04457 1.20505 0.96613 0.95172 0.78209 0.88612 1.92802 1.90765 1.83807 1.52816 1.20342 1.00195 0.95570 0.96634 1.21117 1.00788 0.93564 0.98172 1.21374 0.97413 1.00832 0.93409 1.21209 0.99722 0.93673 1.00403 1.20217 0.94974 0.95145 0.96125 1.18275 0.94857 0.93775 0.92705 1.22214 0.92337 1.37253 1.12601 0.93846 1.27421 1.10600 0.92283 0.92748 1.70918 1.17544 1.41802 1.26760 0.82936 0.69377 0.77526 0.76380 1.20454 1.19531 1.19506 1.20912 0.98723 1.00026 0.94183 0.90752 0.89547 0.90054 0.83630 0.83002 0.86734 0.98079 0.98046 0.93384 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.51 71.98 0.68 -2.43 15 2 C 0.13 3.37 4.18 29.84 0.12 3.50 15 3 H 0.10 2.31 7.88 -2.39 -0.02 2.29 15 4 F -0.22 -6.39 16.93 44.97 0.76 -5.63 15 5 C -0.13 -4.08 5.04 -19.87 -0.10 -4.18 15 6 C -0.12 -3.48 9.15 22.27 0.20 -3.28 15 7 C -0.11 -3.48 10.05 22.27 0.22 -3.26 15 8 C -0.13 -5.16 9.70 22.27 0.22 -4.95 15 9 C -0.06 -2.90 5.07 -19.87 -0.10 -3.00 15 10 C 0.04 2.19 4.42 29.10 0.13 2.32 15 11 C -0.61 -35.49 9.09 25.60 0.23 -35.26 15 12 H 0.04 2.55 7.74 -2.91 -0.02 2.52 15 13 C -0.03 -1.92 5.46 84.65 0.46 -1.45 15 14 N -0.93 -58.01 13.65 21.45 0.29 -57.72 15 15 Si 1.12 50.90 29.90 68.60 2.05 52.95 15 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 19 C -0.12 -4.74 9.33 22.27 0.21 -4.53 15 20 H 0.07 1.30 7.70 -2.39 -0.02 1.28 15 21 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.15 3.37 7.88 -2.91 -0.02 3.34 15 24 H 0.15 3.55 8.06 -2.91 -0.02 3.53 15 25 H 0.11 4.44 8.06 -2.91 -0.02 4.41 15 26 H 0.00 0.06 7.96 -2.39 -0.02 0.04 15 27 H 0.00 0.07 7.94 -2.39 -0.02 0.05 15 28 H 0.26 16.09 7.22 -92.71 -0.67 15.42 15 29 H 0.11 4.45 7.95 -2.91 -0.02 4.43 15 Total: -1.00 -66.89 257.48 6.61 -60.28 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.22 Total: 6.64 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 2.28 Total: -56.52 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.29 Total: -57.72 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.76 Total: -5.63 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Total: -66.89 6.61 -60.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.919 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds