Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 F 1.39903 * 109.47135 * 240.00199 * 2 1 3 5 5 C 1.50696 * 109.47328 * 119.99959 * 2 1 3 6 6 C 1.38267 * 119.99953 * 64.97385 * 5 2 1 7 7 C 1.38213 * 119.99882 * 179.97438 * 6 5 2 8 8 C 1.38258 * 120.00210 * 359.85632 * 7 6 5 9 9 C 1.38212 * 119.99752 * 0.40116 * 8 7 6 10 10 C 1.50700 * 119.99804 * 179.81161 * 9 8 7 11 11 C 1.50706 * 109.47062 * 269.72032 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.38211 * 120.00502 * 245.00070 * 5 2 1 20 20 H 1.09004 * 109.46912 * 300.00224 * 1 2 3 21 21 H 1.09005 * 109.47213 * 59.99658 * 1 2 3 22 22 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.99528 * 0.02562 * 6 5 2 24 24 H 1.08000 * 119.99679 * 180.02562 * 7 6 5 25 25 H 1.07997 * 120.00027 * 180.21143 * 8 7 6 26 26 H 1.09004 * 109.47406 * 149.72738 * 10 9 8 27 27 H 1.08993 * 109.47274 * 29.72364 * 10 9 8 28 28 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 29 29 H 1.08006 * 119.99332 * 359.97438 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 6 1.7852 -2.0603 1.3986 7 6 2.2465 -2.7120 2.5269 8 6 2.9575 -2.0146 3.4859 9 6 3.1999 -0.6640 3.3203 10 6 3.9712 0.0970 4.3676 11 6 3.0142 0.6571 5.3882 12 1 1.9537 0.4793 5.2886 13 6 3.4927 1.3955 6.4497 14 7 4.7848 1.6066 6.5745 15 14 2.3066 2.0891 7.7151 16 1 3.0672 2.8330 8.7511 17 1 1.3514 3.0088 7.0464 18 1 1.5581 0.9769 8.3538 19 6 2.7396 -0.0124 2.1911 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.2325 -2.6057 0.6480 24 1 2.0538 -3.7665 2.6580 25 1 3.3208 -2.5246 4.3658 26 1 4.5172 0.9136 3.8950 27 1 4.6753 -0.5741 4.8595 28 1 5.4008 1.2463 5.9175 29 1 2.9326 1.0421 2.0597 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229158.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = -53.161044 kcal Electronic energy + Delta-G solvation = -12974.355089 eV Core-core repulsion = 10582.606828 eV Total energy + Delta-G solvation = -2391.748261 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.51532 -38.84016 -34.13957 -32.86438 -31.06456 -29.22019 -26.66788 -23.78561 -23.11175 -21.57161 -19.76699 -16.94796 -16.33651 -16.05425 -15.32638 -14.92597 -14.23479 -13.84828 -13.63821 -13.18599 -12.81524 -12.34684 -12.29699 -11.82707 -11.56282 -11.44477 -11.15516 -10.88977 -10.67167 -10.26240 -10.17065 -9.85017 -9.01159 -8.42365 -8.38465 -7.87555 -6.42394 -4.14093 1.78330 1.97951 3.41045 3.42489 3.61529 4.25540 4.52380 4.62903 4.76132 4.95751 5.21725 5.32311 5.43141 5.47550 5.64987 5.75601 5.92272 6.00754 6.05493 6.23026 6.39686 6.59984 6.91710 6.94423 7.02287 7.13160 7.54302 7.58245 8.07235 8.38221 8.78996 9.57118 10.96570 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.007582 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.718045 B = 3691.883295 C = 3898.845186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 H 0.088 0.912 4 F -0.214 7.214 5 C -0.131 4.131 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.116 4.116 9 C -0.030 4.030 10 C 0.035 3.965 11 C -0.594 4.594 12 H 0.050 0.950 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 1.070 2.930 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.106 4.106 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.269 0.731 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -4.320 -10.153 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.098 3.902 3 H 0.106 0.894 4 F -0.195 7.195 5 C -0.131 4.131 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.134 4.134 9 C -0.030 4.030 10 C -0.002 4.002 11 C -0.632 4.632 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.546 5.546 15 Si 0.898 3.102 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.124 4.124 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.902 -3.441 -8.787 11.692 hybrid contribution 0.057 -1.001 -1.436 1.751 sum -6.845 -4.442 -10.223 13.081 Atomic orbital electron populations 1.22358 0.93844 1.03562 1.03277 1.20335 0.94675 0.95298 0.79845 0.89415 1.92808 1.90425 1.83628 1.52651 1.20034 1.01572 0.94979 0.96533 1.20668 1.01795 0.93851 0.98074 1.21021 0.99152 0.99341 0.94583 1.21137 0.99154 0.94484 0.98657 1.20437 0.94963 0.93468 0.94131 1.18486 0.95201 0.94412 0.92120 1.21885 0.94102 1.36816 1.10363 0.93115 1.25890 0.98910 0.95020 0.98859 1.70790 1.02299 1.43941 1.37574 0.83520 0.74505 0.76380 0.75780 1.20679 1.21362 1.21358 1.20897 0.98159 0.99558 0.93809 0.90378 0.91578 0.91444 0.86918 0.86684 0.86332 0.96216 0.96160 0.92045 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 9.51 37.16 0.35 -1.67 15 2 C 0.13 1.91 4.18 -27.89 -0.12 1.79 15 3 H 0.09 1.13 7.88 -51.93 -0.41 0.72 15 4 F -0.21 -3.31 16.93 2.25 0.04 -3.27 15 5 C -0.13 -2.23 5.04 -104.62 -0.53 -2.76 15 6 C -0.13 -2.06 9.15 -39.58 -0.36 -2.42 15 7 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 15 8 C -0.12 -2.29 9.70 -39.58 -0.38 -2.67 15 9 C -0.03 -0.66 5.07 -104.63 -0.53 -1.19 15 10 C 0.03 0.88 4.42 -29.03 -0.13 0.76 15 11 C -0.59 -16.72 9.09 -34.44 -0.31 -17.03 15 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 15 13 C 0.02 0.49 5.46 -17.82 -0.10 0.39 15 14 N -0.91 -27.46 13.65 55.43 0.76 -26.70 15 15 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 19 C -0.11 -2.08 9.33 -39.58 -0.37 -2.45 15 20 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.77 7.70 -51.93 -0.40 0.37 15 23 H 0.11 1.59 7.88 -52.49 -0.41 1.18 15 24 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.12 2.26 8.06 -52.49 -0.42 1.83 15 26 H 0.02 0.52 7.96 -51.93 -0.41 0.11 15 27 H 0.02 0.53 7.94 -51.93 -0.41 0.12 15 28 H 0.27 8.06 7.22 -40.82 -0.29 7.76 15 29 H 0.12 2.25 7.95 -52.48 -0.42 1.83 15 LS Contribution 257.48 15.07 3.88 3.88 Total: -1.00 -30.30 257.48 -6.93 -37.23 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.65 Total: -1.36 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -2.87 Total: -29.72 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.76 Total: -26.70 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.30 -6.93 -37.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229158.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.926 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds