Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 F 1.39903 * 109.47135 * 240.00199 * 2 1 3 5 5 C 1.50696 * 109.47328 * 119.99959 * 2 1 3 6 6 C 1.38267 * 119.99953 * 64.97385 * 5 2 1 7 7 C 1.38213 * 119.99882 * 179.97438 * 6 5 2 8 8 C 1.38258 * 120.00210 * 359.85632 * 7 6 5 9 9 C 1.38212 * 119.99752 * 0.40116 * 8 7 6 10 10 C 1.50700 * 119.99804 * 179.81161 * 9 8 7 11 11 C 1.50706 * 109.47062 * 269.72032 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.38211 * 120.00502 * 245.00070 * 5 2 1 20 20 H 1.09004 * 109.46912 * 300.00224 * 1 2 3 21 21 H 1.09005 * 109.47213 * 59.99658 * 1 2 3 22 22 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.99528 * 0.02562 * 6 5 2 24 24 H 1.08000 * 119.99679 * 180.02562 * 7 6 5 25 25 H 1.07997 * 120.00027 * 180.21143 * 8 7 6 26 26 H 1.09004 * 109.47406 * 149.72738 * 10 9 8 27 27 H 1.08993 * 109.47274 * 29.72364 * 10 9 8 28 28 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 29 29 H 1.08006 * 119.99332 * 359.97438 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 6 1.7852 -2.0603 1.3986 7 6 2.2465 -2.7120 2.5269 8 6 2.9575 -2.0146 3.4859 9 6 3.1999 -0.6640 3.3203 10 6 3.9712 0.0970 4.3676 11 6 3.0142 0.6571 5.3882 12 1 1.9537 0.4793 5.2886 13 6 3.4927 1.3955 6.4497 14 7 4.7848 1.6066 6.5745 15 14 2.3066 2.0891 7.7151 16 1 3.0672 2.8330 8.7511 17 1 1.3514 3.0088 7.0464 18 1 1.5581 0.9769 8.3538 19 6 2.7396 -0.0124 2.1911 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.2325 -2.6057 0.6480 24 1 2.0538 -3.7665 2.6580 25 1 3.3208 -2.5246 4.3658 26 1 4.5172 0.9136 3.8950 27 1 4.6753 -0.5741 4.8595 28 1 5.4008 1.2463 5.9175 29 1 2.9326 1.0421 2.0597 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229158.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = -69.118946 kcal Electronic energy + Delta-G solvation = -12975.047075 eV Core-core repulsion = 10582.606828 eV Total energy + Delta-G solvation = -2392.440247 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.67920 -40.30583 -36.03431 -34.32420 -32.74046 -30.48262 -28.53132 -25.38746 -24.75437 -23.03036 -21.23256 -18.99086 -17.71692 -17.34170 -16.68636 -16.04491 -15.70965 -15.68061 -15.46799 -14.78126 -14.13667 -13.77249 -13.47721 -13.39393 -13.12028 -12.97837 -12.82718 -12.49686 -12.09082 -11.94533 -11.62829 -11.52133 -11.02432 -10.60318 -9.80953 -9.52291 -8.69894 -6.44737 0.34692 0.50517 1.51662 1.59633 1.79673 2.53291 2.82887 3.10967 3.40902 3.68972 3.85390 4.08638 4.14828 4.22223 4.24625 4.52484 4.60040 4.74641 4.84981 4.96569 5.01883 5.14442 5.16469 5.19798 5.50981 5.56588 5.86768 5.88191 6.08080 6.11454 6.50891 7.35947 8.67176 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.007582 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.718045 B = 3691.883295 C = 3898.845186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.133 3.867 3 H 0.097 0.903 4 F -0.219 7.219 5 C -0.127 4.127 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.132 4.132 9 C -0.064 4.064 10 C 0.040 3.960 11 C -0.604 4.604 12 H 0.047 0.953 13 C -0.034 4.034 14 N -0.935 5.935 15 Si 1.119 2.881 16 H -0.281 1.281 17 H -0.268 1.268 18 H -0.269 1.269 19 C -0.120 4.120 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.146 0.854 24 H 0.152 0.848 25 H 0.114 0.886 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.256 0.744 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -5.100 -11.250 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.097 3.903 3 H 0.115 0.885 4 F -0.200 7.200 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.150 4.150 9 C -0.065 4.065 10 C 0.003 3.997 11 C -0.642 4.642 12 H 0.065 0.935 13 C -0.232 4.232 14 N -0.572 5.572 15 Si 0.939 3.061 16 H -0.207 1.207 17 H -0.193 1.193 18 H -0.194 1.194 19 C -0.138 4.138 20 H 0.095 0.905 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.164 0.836 24 H 0.170 0.830 25 H 0.133 0.867 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.193 -4.238 -9.911 14.167 hybrid contribution 0.780 -0.823 -1.197 1.649 sum -8.413 -5.061 -11.109 14.825 Atomic orbital electron populations 1.22340 0.91470 1.04385 1.04350 1.20470 0.96431 0.95205 0.78223 0.88492 1.92801 1.90695 1.83789 1.52732 1.20342 1.00091 0.95545 0.96747 1.21120 1.00651 0.93604 0.98268 1.21372 0.97252 1.00935 0.93458 1.21208 1.00291 0.93760 0.99750 1.20212 0.97072 0.94610 0.94562 1.18281 0.94828 0.93747 0.92822 1.22207 0.94293 1.36654 1.11057 0.93493 1.27463 0.99602 0.95049 1.01060 1.70919 1.03164 1.45334 1.37755 0.82924 0.72942 0.76627 0.73611 1.20678 1.19301 1.19429 1.20910 0.99136 0.99682 0.94108 0.90451 0.89423 0.90760 0.83620 0.82999 0.86745 0.98271 0.98212 0.93471 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.51 71.98 0.68 -2.66 15 2 C 0.13 3.41 4.18 29.85 0.12 3.53 15 3 H 0.10 2.31 7.88 -2.39 -0.02 2.29 15 4 F -0.22 -6.12 16.93 44.97 0.76 -5.36 15 5 C -0.13 -4.07 5.04 -19.87 -0.10 -4.17 15 6 C -0.12 -3.48 9.15 22.27 0.20 -3.27 15 7 C -0.11 -3.47 10.05 22.27 0.22 -3.25 15 8 C -0.13 -5.16 9.70 22.27 0.22 -4.95 15 9 C -0.06 -2.90 5.07 -19.87 -0.10 -3.00 15 10 C 0.04 2.16 4.42 29.10 0.13 2.29 15 11 C -0.60 -34.97 9.09 25.60 0.23 -34.73 15 12 H 0.05 2.69 7.74 -2.91 -0.02 2.67 15 13 C -0.03 -1.99 5.46 84.65 0.46 -1.52 15 14 N -0.93 -58.08 13.65 21.45 0.29 -57.78 15 15 Si 1.12 50.16 29.90 68.60 2.05 52.21 15 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 19 C -0.12 -4.74 9.33 22.27 0.21 -4.53 15 20 H 0.08 1.57 8.14 -2.38 -0.02 1.55 15 21 H 0.09 1.39 8.14 -2.38 -0.02 1.37 15 22 H 0.07 1.38 7.70 -2.39 -0.02 1.36 15 23 H 0.15 3.36 7.88 -2.91 -0.02 3.34 15 24 H 0.15 3.55 8.06 -2.91 -0.02 3.53 15 25 H 0.11 4.44 8.06 -2.91 -0.02 4.41 15 26 H 0.00 -0.05 7.96 -2.39 -0.02 -0.07 15 27 H 0.00 -0.02 7.94 -2.39 -0.02 -0.04 15 28 H 0.26 16.10 7.22 -92.71 -0.67 15.43 15 29 H 0.11 4.45 7.95 -2.91 -0.02 4.43 15 Total: -1.00 -66.29 257.48 6.61 -59.68 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.22 Total: 7.51 kcal Atomic # 6 Polarization: -58.55 SS G_CDS: 2.28 Total: -56.26 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.29 Total: -57.78 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.76 Total: -5.36 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Total: -66.29 6.61 -59.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229158.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.443 kcal (2) G-P(sol) polarization free energy of solvation -66.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds