Wall clock time and date at job start Mon Mar 30 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46847 * 2 1 4 4 C 1.38261 * 119.97759 * 90.00335 * 3 2 1 5 5 C 1.38176 * 120.03104 * 179.97438 * 4 3 2 6 6 C 1.38486 * 119.97048 * 0.02562 * 5 4 3 7 7 F 1.35095 * 120.02602 * 179.97438 * 6 5 4 8 8 C 1.38440 * 119.94677 * 359.97438 * 6 5 4 9 9 C 1.50703 * 120.01005 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47064 * 279.99883 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38217 * 119.97667 * 0.27791 * 8 6 5 19 19 H 1.09004 * 109.46953 * 300.00129 * 1 2 3 20 20 H 1.09002 * 109.47261 * 60.00222 * 1 2 3 21 21 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47076 * 239.99998 * 2 1 3 23 23 H 1.09002 * 109.47261 * 119.99778 * 2 1 3 24 24 H 1.08006 * 119.98477 * 359.97438 * 4 3 2 25 25 H 1.07995 * 120.01911 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 159.99976 * 9 8 6 27 27 H 1.09001 * 109.46980 * 40.00076 * 9 8 6 28 28 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 29 29 H 1.07997 * 119.98621 * 179.72351 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0722 1.1976 5 6 2.7236 3.3748 1.1989 6 6 2.9545 4.0281 -0.0001 7 9 3.4047 5.3018 -0.0002 8 6 2.7235 3.3749 -1.1987 9 6 2.9748 4.0843 -2.5043 10 6 1.8108 4.9892 -2.8165 11 1 0.9731 5.0453 -2.1373 12 6 1.8159 5.7462 -3.9689 13 7 2.8363 5.6783 -4.7958 14 14 0.3734 6.8683 -4.3555 15 1 0.6191 8.2102 -3.7690 16 1 0.2228 6.9915 -5.8278 17 1 -0.8685 6.2952 -3.7773 18 6 2.2574 2.0737 -1.1974 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.0821 1.5626 2.1326 25 1 2.9031 3.8835 2.1345 26 1 3.0877 3.3494 -3.3013 27 1 3.8857 4.6779 -2.4258 28 1 2.8396 6.2106 -5.6067 29 1 2.0729 1.5656 -2.1323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260301829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:00 Heat of formation + Delta-G solvation = -48.228031 kcal Electronic energy + Delta-G solvation = -13104.938602 eV Core-core repulsion = 10713.404253 eV Total energy + Delta-G solvation = -2391.534349 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.97736 -38.75371 -34.14398 -32.99807 -31.25210 -28.74356 -27.03349 -23.54854 -23.31789 -21.58016 -19.62799 -16.81295 -16.33815 -15.91051 -15.02242 -14.65713 -14.40751 -13.81439 -13.46427 -13.08719 -12.64765 -12.36059 -12.21371 -12.15023 -11.39214 -11.23766 -10.92161 -10.89770 -10.75450 -10.47860 -10.34326 -9.58825 -9.46646 -8.42264 -8.22270 -7.73009 -6.03863 -4.07473 1.76692 1.90694 3.31884 3.37508 3.41578 4.17898 4.46939 5.01298 5.03653 5.13690 5.31202 5.40874 5.52327 5.59985 5.75185 5.86399 5.90888 6.00965 6.24607 6.34110 6.51120 6.64208 6.80727 6.92423 7.07731 7.45942 7.62905 7.68905 7.90806 8.29159 8.95912 9.55965 11.06411 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032615 B = 0.009265 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.299401 B = 3021.250232 C = 3426.260408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.101 4.101 4 C -0.119 4.119 5 C -0.158 4.158 6 C 0.090 3.910 7 F -0.136 7.136 8 C -0.067 4.067 9 C 0.049 3.951 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.097 4.097 19 H 0.053 0.947 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.262 0.738 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -8.916 9.467 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.137 4.137 5 C -0.177 4.177 6 C 0.071 3.929 7 F -0.115 7.115 8 C -0.067 4.067 9 C 0.013 3.987 10 C -0.549 4.549 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.115 4.115 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.946 -8.797 9.293 12.943 hybrid contribution -0.668 0.990 -0.244 1.219 sum -2.614 -7.807 9.049 12.234 Atomic orbital electron populations 1.21759 0.95074 1.01130 1.02472 1.20455 0.95955 0.92893 1.02284 1.19835 1.00779 0.96245 0.93227 1.20564 1.01815 0.94067 0.97291 1.20991 1.04069 0.96055 0.96606 1.17633 1.01270 0.80031 0.93991 1.91467 1.86519 1.36168 1.97337 1.20797 0.95299 0.93996 0.96650 1.18310 0.98034 0.95159 0.87243 1.20993 1.03682 1.24029 1.06147 0.92586 1.24984 0.96226 0.96875 0.96097 1.69954 1.30154 1.40988 1.12177 0.86519 0.82656 0.81082 0.77373 1.20517 1.21104 1.19801 1.20844 0.99338 0.93908 0.97413 0.92748 0.92225 0.92863 0.91209 0.91565 0.86325 0.85863 0.94927 0.94867 0.92808 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 15 2 C -0.08 -0.97 6.06 -27.88 -0.17 -1.13 15 3 C -0.10 -1.60 5.13 -104.62 -0.54 -2.14 15 4 C -0.12 -1.83 9.70 -39.60 -0.38 -2.21 15 5 C -0.16 -2.73 10.03 -39.51 -0.40 -3.13 15 6 C 0.09 1.91 7.24 -39.42 -0.29 1.63 15 7 F -0.14 -3.14 16.66 2.25 0.04 -3.10 15 8 C -0.07 -1.49 5.08 -104.55 -0.53 -2.03 15 9 C 0.05 1.31 4.83 -29.03 -0.14 1.17 15 10 C -0.51 -14.70 9.09 -34.44 -0.31 -15.01 15 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 13 N -0.89 -26.84 13.29 55.43 0.74 -26.10 15 14 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 15 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 18 C -0.10 -1.85 9.32 -39.59 -0.37 -2.22 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.05 0.51 8.14 -51.93 -0.42 0.08 15 22 H 0.07 0.82 8.09 -51.93 -0.42 0.40 15 23 H 0.07 0.70 8.09 -51.93 -0.42 0.28 15 24 H 0.12 1.44 8.06 -52.48 -0.42 1.02 15 25 H 0.12 1.81 8.06 -52.49 -0.42 1.38 15 26 H 0.03 0.88 8.01 -51.93 -0.42 0.47 15 27 H 0.03 0.95 7.95 -51.93 -0.41 0.53 15 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 29 H 0.13 2.27 8.04 -52.49 -0.42 1.85 15 LS Contribution 259.39 15.07 3.91 3.91 Total: -1.00 -30.38 259.39 -6.94 -37.32 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -3.74 Total: -4.19 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -2.85 Total: -24.78 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.38 -6.94 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.911 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds