Wall clock time and date at job start Mon Mar 30 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46847 * 2 1 4 4 C 1.38261 * 119.97759 * 90.00335 * 3 2 1 5 5 C 1.38176 * 120.03104 * 179.97438 * 4 3 2 6 6 C 1.38486 * 119.97048 * 0.02562 * 5 4 3 7 7 F 1.35095 * 120.02602 * 179.97438 * 6 5 4 8 8 C 1.38440 * 119.94677 * 359.97438 * 6 5 4 9 9 C 1.50703 * 120.01005 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47064 * 279.99883 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38217 * 119.97667 * 0.27791 * 8 6 5 19 19 H 1.09004 * 109.46953 * 300.00129 * 1 2 3 20 20 H 1.09002 * 109.47261 * 60.00222 * 1 2 3 21 21 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47076 * 239.99998 * 2 1 3 23 23 H 1.09002 * 109.47261 * 119.99778 * 2 1 3 24 24 H 1.08006 * 119.98477 * 359.97438 * 4 3 2 25 25 H 1.07995 * 120.01911 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 159.99976 * 9 8 6 27 27 H 1.09001 * 109.46980 * 40.00076 * 9 8 6 28 28 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 29 29 H 1.07997 * 119.98621 * 179.72351 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0722 1.1976 5 6 2.7236 3.3748 1.1989 6 6 2.9545 4.0281 -0.0001 7 9 3.4047 5.3018 -0.0002 8 6 2.7235 3.3749 -1.1987 9 6 2.9748 4.0843 -2.5043 10 6 1.8108 4.9892 -2.8165 11 1 0.9731 5.0453 -2.1373 12 6 1.8159 5.7462 -3.9689 13 7 2.8363 5.6783 -4.7958 14 14 0.3734 6.8683 -4.3555 15 1 0.6191 8.2102 -3.7690 16 1 0.2228 6.9915 -5.8278 17 1 -0.8685 6.2952 -3.7773 18 6 2.2574 2.0737 -1.1974 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.0821 1.5626 2.1326 25 1 2.9031 3.8835 2.1345 26 1 3.0877 3.3494 -3.3013 27 1 3.8857 4.6779 -2.4258 28 1 2.8396 6.2106 -5.6067 29 1 2.0729 1.5656 -2.1323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260301829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:00 Heat of formation + Delta-G solvation = -64.888333 kcal Electronic energy + Delta-G solvation = -13105.661047 eV Core-core repulsion = 10713.404253 eV Total energy + Delta-G solvation = -2392.256794 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.66366 -40.17271 -35.84503 -34.57897 -33.00001 -30.09952 -28.87290 -25.41744 -24.58568 -23.05860 -21.09582 -18.63197 -18.29640 -17.42092 -16.71620 -16.40260 -15.96240 -14.99213 -14.81755 -14.50853 -14.29134 -14.03473 -13.94214 -13.44675 -13.29152 -12.81980 -12.62895 -12.38502 -12.30345 -11.85342 -11.73788 -11.58986 -11.33926 -10.65841 -9.71956 -9.26122 -8.25207 -6.38906 0.32200 0.45095 1.35691 1.37985 1.49054 2.35893 2.76727 3.05631 3.55650 3.89960 3.91862 4.11131 4.33833 4.43992 4.60365 4.63075 4.74448 5.04389 5.08013 5.14208 5.17916 5.25207 5.32195 5.39376 5.47730 5.64443 5.70163 5.78511 6.04625 6.17523 6.71503 7.29358 8.84879 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032615 B = 0.009265 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.299401 B = 3021.250232 C = 3426.260408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.088 4.088 4 C -0.102 4.102 5 C -0.147 4.147 6 C 0.054 3.946 7 F -0.158 7.158 8 C -0.103 4.103 9 C 0.059 3.941 10 C -0.530 4.530 11 H 0.050 0.950 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.274 1.274 17 H -0.264 1.264 18 C -0.108 4.108 19 H 0.058 0.942 20 H 0.038 0.962 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.168 0.832 25 H 0.154 0.846 26 H 0.012 0.988 27 H -0.004 1.004 28 H 0.267 0.733 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -10.423 11.590 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.088 4.088 4 C -0.120 4.120 5 C -0.166 4.166 6 C 0.035 3.965 7 F -0.137 7.137 8 C -0.103 4.103 9 C 0.022 3.978 10 C -0.568 4.568 11 H 0.069 0.931 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.791 3.209 15 H -0.199 1.199 16 H -0.199 1.199 17 H -0.188 1.188 18 C -0.126 4.126 19 H 0.077 0.923 20 H 0.057 0.943 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.116 0.884 24 H 0.186 0.814 25 H 0.172 0.828 26 H 0.030 0.970 27 H 0.014 0.986 28 H 0.076 0.924 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.563 -10.316 11.424 15.799 hybrid contribution -0.142 1.346 -0.840 1.593 sum -3.705 -8.970 10.583 14.359 Atomic orbital electron populations 1.21756 0.94328 1.02563 1.01700 1.20570 0.96404 0.90300 1.04140 1.20279 0.98515 0.97937 0.92057 1.21147 0.98889 0.93037 0.98924 1.21352 1.02494 0.96755 0.95969 1.18029 1.03464 0.79759 0.95283 1.91399 1.87140 1.37669 1.97489 1.20531 0.98978 0.95683 0.95144 1.17995 0.95999 0.94300 0.89500 1.21289 1.04181 1.24878 1.06415 0.93146 1.25946 0.99237 0.98381 0.95771 1.70077 1.32190 1.41950 1.12696 0.85408 0.79048 0.78747 0.77652 1.19881 1.19901 1.18813 1.20919 0.99734 0.92821 0.99157 0.92267 0.94292 0.90404 0.90770 0.88409 0.81415 0.82820 0.96996 0.98568 0.92415 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.89 71.98 0.71 -2.12 15 2 C -0.08 -1.58 6.06 29.85 0.18 -1.39 15 3 C -0.09 -2.54 5.13 -19.86 -0.10 -2.65 15 4 C -0.10 -2.70 9.70 22.26 0.22 -2.48 15 5 C -0.15 -4.72 10.03 22.31 0.22 -4.50 15 6 C 0.05 2.32 7.24 22.38 0.16 2.48 15 7 F -0.16 -7.62 16.66 44.97 0.75 -6.87 15 8 C -0.10 -4.80 5.08 -19.82 -0.10 -4.90 15 9 C 0.06 3.36 4.83 29.10 0.14 3.50 15 10 C -0.53 -31.90 9.09 25.60 0.23 -31.67 15 11 H 0.05 3.01 7.74 -2.91 -0.02 2.98 15 12 C 0.00 0.29 5.46 84.66 0.46 0.75 15 13 N -0.93 -57.84 13.29 21.45 0.28 -57.55 15 14 Si 0.97 45.80 29.54 68.60 2.03 47.82 15 15 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 17 H -0.26 -11.99 7.11 99.48 0.71 -11.28 15 18 C -0.11 -4.15 9.32 22.26 0.21 -3.94 15 19 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.04 0.91 8.14 -2.39 -0.02 0.89 15 21 H 0.08 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.07 1.49 8.09 -2.39 -0.02 1.47 15 23 H 0.10 1.47 8.09 -2.39 -0.02 1.45 15 24 H 0.17 2.89 8.06 -2.91 -0.02 2.87 15 25 H 0.15 3.95 8.06 -2.91 -0.02 3.92 15 26 H 0.01 0.69 8.01 -2.39 -0.02 0.67 15 27 H 0.00 -0.25 7.95 -2.39 -0.02 -0.26 15 28 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 29 H 0.12 4.60 8.04 -2.91 -0.02 4.58 15 Total: -1.00 -69.42 259.39 6.52 -62.90 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.12 Total: 0.61 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 2.33 Total: -46.91 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.28 Total: -57.55 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.75 Total: -6.87 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.42 6.52 -62.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.986 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds