Wall clock time and date at job start Mon Mar 30 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48501 * 109.46856 * 240.00059 * 3 2 1 5 5 H 1.48501 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47360 * 119.99581 * 3 2 1 7 7 C 1.37875 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.38256 * 120.00144 * 270.02188 * 11 10 9 13 13 C 1.38208 * 120.00036 * 179.82624 * 12 11 10 14 14 C 1.38260 * 120.00078 * 0.41178 * 13 12 11 15 15 C 1.38212 * 119.99650 * 359.52112 * 14 13 12 16 16 C 1.50707 * 119.99857 * 180.25737 * 15 14 13 17 17 F 1.39901 * 109.46766 * 90.00626 * 16 15 14 18 18 C 1.38216 * 119.99818 * 90.00125 * 11 10 9 19 19 H 0.97006 * 119.99763 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46722 * 60.00045 * 9 7 2 21 21 H 1.09005 * 109.47308 * 300.00094 * 9 7 2 22 22 H 1.09003 * 109.47286 * 60.00345 * 10 9 7 23 23 H 1.08993 * 109.47429 * 300.00051 * 10 9 7 24 24 H 1.07999 * 120.00024 * 0.02562 * 12 11 10 25 25 H 1.08004 * 120.00275 * 180.21092 * 13 12 11 26 26 H 1.08002 * 120.00476 * 179.80744 * 14 13 12 27 27 H 1.09005 * 109.47126 * 210.00184 * 16 15 14 28 28 H 1.08998 * 109.47249 * 330.00814 * 16 15 14 29 29 H 1.08005 * 120.00025 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4915 -4.9672 0.0025 12 6 1.1450 -5.5648 1.2001 13 6 0.4508 -6.7599 1.2006 14 6 0.1103 -7.3622 0.0036 15 6 0.4556 -6.7641 -1.1937 16 6 0.0794 -7.4176 -2.4985 17 9 -1.1796 -6.9610 -2.9028 18 6 1.1466 -5.5666 -1.1943 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5570 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.8711 -3.6040 0.8923 23 1 2.8724 -3.6048 -0.8876 24 1 1.4139 -5.0961 2.1351 25 1 0.1770 -7.2250 2.1361 26 1 -0.4294 -8.2976 0.0039 27 1 0.8189 -7.1643 -3.2582 28 1 0.0488 -8.4993 -2.3676 29 1 1.4167 -5.0994 -2.1298 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:37 Heat of formation + Delta-G solvation = -51.799976 kcal Electronic energy + Delta-G solvation = -12725.854016 eV Core-core repulsion = 10334.164776 eV Total energy + Delta-G solvation = -2391.689240 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -47.50600 -39.03683 -34.23579 -32.35602 -31.54028 -29.00223 -26.21621 -25.06934 -22.12950 -21.42308 -19.76793 -16.54809 -16.14189 -15.95170 -15.78047 -15.25001 -14.48920 -14.48306 -13.73221 -12.93602 -12.57275 -12.54977 -12.05813 -11.99551 -11.32176 -11.10519 -10.91997 -10.77527 -10.62449 -10.47404 -9.83262 -9.62985 -9.11980 -8.62290 -8.34621 -8.16509 -5.99462 -4.03135 1.56584 1.73200 3.33343 3.37900 3.40033 4.03920 4.46030 4.66197 4.79108 4.95282 5.27229 5.28328 5.35847 5.51244 5.71189 5.77406 5.88760 6.07480 6.30792 6.44192 6.62828 6.71817 6.75459 6.98149 7.07595 7.33656 7.67053 7.80607 7.99814 8.39802 9.03630 9.60928 11.11525 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043286 B = 0.006612 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.711788 B = 4233.731877 C = 4548.271506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.057 4.057 12 C -0.111 4.111 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.141 4.141 16 C 0.110 3.890 17 F -0.213 7.213 18 C -0.099 4.099 19 H 0.261 0.739 20 H 0.018 0.982 21 H 0.017 0.983 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -14.304 -1.272 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.118 4.118 11 C -0.057 4.057 12 C -0.129 4.129 13 C -0.141 4.141 14 C -0.137 4.137 15 C -0.141 4.141 16 C 0.055 3.945 17 F -0.194 7.194 18 C -0.117 4.117 19 H 0.071 0.929 20 H 0.036 0.964 21 H 0.036 0.964 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.141 0.859 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.606 -14.173 -1.288 14.322 hybrid contribution 0.282 1.011 0.047 1.051 sum 1.887 -13.162 -1.241 13.355 Atomic orbital electron populations 1.69967 1.06076 1.26762 1.50464 1.25026 0.94837 0.99248 0.95259 0.86646 0.79565 0.83100 0.78612 1.20221 1.21274 1.20227 1.21208 0.92998 0.90957 1.51081 0.92632 1.19076 0.93652 0.90429 0.97591 1.20863 0.98386 0.91163 1.01408 1.20398 0.96609 0.96272 0.92430 1.21178 0.98370 0.95128 0.98180 1.21064 0.99276 0.96152 0.97578 1.20844 1.00702 1.00077 0.92061 1.20135 1.01900 0.97243 0.94846 1.20758 0.81434 0.98272 0.94023 1.92810 1.43685 1.91172 1.91752 1.20975 0.98182 0.94084 0.98437 0.92888 0.96403 0.96432 0.92096 0.92147 0.85937 0.86291 0.86556 0.90150 0.90390 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.51 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 15 9 C 0.03 0.78 4.95 -27.89 -0.14 0.64 15 10 C -0.08 -1.68 5.28 -27.88 -0.15 -1.83 15 11 C -0.06 -1.06 5.13 -104.62 -0.54 -1.59 15 12 C -0.11 -1.85 9.70 -39.59 -0.38 -2.23 15 13 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 15 14 C -0.12 -1.66 9.70 -39.58 -0.38 -2.04 15 15 C -0.14 -2.10 5.60 -104.62 -0.59 -2.69 15 16 C 0.11 1.33 7.68 36.01 0.28 1.60 15 17 F -0.21 -3.25 17.34 2.25 0.04 -3.21 15 18 C -0.10 -1.68 9.36 -39.58 -0.37 -2.05 15 19 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 20 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 22 H 0.06 1.21 8.09 -51.93 -0.42 0.79 15 23 H 0.06 1.21 8.09 -51.93 -0.42 0.79 15 24 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 25 H 0.12 1.38 8.06 -52.48 -0.42 0.96 15 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.08 0.82 8.09 -51.93 -0.42 0.40 15 28 H 0.08 0.71 8.09 -51.93 -0.42 0.29 15 29 H 0.12 1.99 8.06 -52.48 -0.42 1.56 15 LS Contribution 260.42 15.07 3.92 3.92 Total: -1.00 -31.24 260.42 -7.16 -38.40 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -3.76 Total: -3.29 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.08 Total: -26.02 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.24 -7.16 -38.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.404 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds