Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38760 * 120.63050 * 2 1 4 4 N 1.32199 * 119.11646 * 179.72618 * 3 2 1 5 5 N 1.28740 * 120.39027 * 0.27920 * 4 3 2 6 6 C 1.31978 * 121.35778 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.55947 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46770 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47088 * 60.00884 * 7 6 5 10 10 H 1.07999 * 119.99994 * 275.10034 * 9 7 6 11 11 C 1.37876 * 120.00137 * 95.10053 * 9 7 6 12 12 N 1.31518 * 120.00261 * 5.37722 * 11 9 7 13 13 Si 1.86801 * 119.99839 * 185.37541 * 11 9 7 14 14 H 1.48498 * 109.47316 * 90.00354 * 13 11 9 15 15 H 1.48506 * 109.47011 * 209.99942 * 13 11 9 16 16 H 1.48495 * 109.47483 * 329.99755 * 13 11 9 17 17 C 1.53001 * 109.47786 * 300.00411 * 7 6 5 18 18 N 1.46899 * 109.47186 * 185.31261 * 17 7 6 19 19 N 1.32043 * 120.87550 * 0.02562 * 6 5 4 20 20 H 1.09006 * 109.47340 * 89.99408 * 1 2 3 21 21 H 1.08998 * 109.47172 * 209.99873 * 1 2 3 22 22 H 1.09003 * 109.47298 * 329.99693 * 1 2 3 23 23 H 1.08000 * 120.44602 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00028 * 180.02562 * 12 11 9 25 25 H 1.08998 * 109.46869 * 305.31895 * 17 7 6 26 26 H 1.08999 * 109.46531 * 65.31380 * 17 7 6 27 27 H 1.00904 * 110.99745 * 56.05074 * 18 17 7 28 28 H 1.00899 * 110.99559 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1940 0.0000 4 7 3.5355 1.1591 0.0055 5 7 4.1572 0.0317 0.0054 6 6 3.5020 -1.1139 0.0003 7 6 4.2709 -2.4100 -0.0002 8 1 3.5723 -3.2468 -0.0051 9 6 5.1337 -2.4828 1.2332 10 1 6.1103 -2.0216 1.2370 11 6 4.6764 -3.1380 2.3569 12 7 3.5345 -3.7895 2.3192 13 14 5.6788 -3.1005 3.9327 14 1 5.2698 -1.9313 4.7519 15 1 5.4417 -4.3496 4.7000 16 1 7.1216 -2.9908 3.5992 17 6 5.1558 -2.4778 -1.2464 18 7 5.8079 -3.7924 -1.3131 19 7 2.1819 -1.1395 -0.0053 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6916 2.1393 -0.0004 24 1 3.2127 -4.2501 3.1098 25 1 4.5429 -2.3306 -2.1356 26 1 5.9153 -1.6976 -1.1954 27 1 5.1257 -4.5357 -1.2962 28 1 6.3981 -3.8623 -2.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260526553.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = 63.377623 kcal Electronic energy + Delta-G solvation = -13469.452025 eV Core-core repulsion = 11134.969973 eV Total energy + Delta-G solvation = -2334.482052 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.99558 -35.57311 -34.59439 -32.60722 -32.22954 -28.90477 -28.23072 -24.60349 -23.88811 -22.87557 -20.07360 -18.08792 -16.49032 -15.82284 -15.37143 -15.00888 -14.61901 -13.89224 -13.54995 -12.97173 -12.78357 -12.38796 -12.19985 -11.91401 -11.30232 -10.97115 -10.83301 -10.73673 -10.44232 -10.40639 -9.75159 -9.25882 -8.90641 -8.60089 -8.39778 -7.71762 -6.08961 -4.08377 1.30731 1.55746 3.31947 3.37992 3.44369 4.26679 4.38226 4.45473 4.60534 4.79597 5.15644 5.28864 5.50298 5.60363 5.65212 5.85338 6.07900 6.18168 6.19418 6.46944 6.79521 6.91237 7.49674 7.84972 7.89359 7.98635 8.26735 8.29912 8.98955 9.35947 9.52321 10.98861 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.012186 C = 0.010402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.767555 B = 2297.259228 C = 2691.124982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.134 3.866 3 C -0.058 4.058 4 N -0.201 5.201 5 N -0.282 5.282 6 C 0.306 3.694 7 C 0.093 3.907 8 H 0.089 0.911 9 C -0.473 4.473 10 H 0.066 0.934 11 C 0.062 3.938 12 N -0.880 5.880 13 Si 0.897 3.103 14 H -0.284 1.284 15 H -0.286 1.286 16 H -0.269 1.269 17 C 0.086 3.914 18 N -0.827 5.827 19 N -0.466 5.466 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.168 0.832 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.067 0.933 27 H 0.336 0.664 28 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 4.769 -5.446 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.023 4.023 3 C -0.227 4.227 4 N -0.050 5.050 5 N -0.131 5.131 6 C 0.039 3.961 7 C 0.072 3.928 8 H 0.107 0.893 9 C -0.511 4.511 10 H 0.085 0.915 11 C -0.141 4.141 12 N -0.517 5.517 13 Si 0.725 3.275 14 H -0.210 1.210 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.046 4.046 18 N -0.355 5.355 19 N -0.188 5.188 20 H 0.101 0.899 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.185 0.815 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.910 4.805 -4.637 7.738 hybrid contribution -1.162 0.086 0.220 1.186 sum -5.072 4.891 -4.416 8.316 Atomic orbital electron populations 1.20716 0.87807 1.04020 1.03300 1.22624 0.98694 0.90138 0.90815 1.24594 0.94485 0.99998 1.03599 1.73597 1.07331 1.20297 1.03753 1.73588 1.31682 0.95291 1.12511 1.26357 0.87189 0.98102 0.84419 1.17983 0.93700 0.86819 0.94346 0.89346 1.20795 1.01188 1.33664 0.95496 0.91531 1.25084 0.95219 0.94541 0.99293 1.69949 1.20270 1.32138 1.29348 0.86495 0.80968 0.77194 0.82876 1.20998 1.21154 1.19310 1.21717 0.96509 0.91413 0.94971 1.58427 1.26859 1.04063 1.46188 1.69021 1.09921 1.28747 1.11120 0.89903 0.89732 0.90308 0.81454 0.92789 0.99064 0.91430 0.85120 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.23 36.01 0.37 -0.88 15 2 C 0.13 2.44 6.83 -82.14 -0.56 1.88 15 3 C -0.06 -1.02 11.05 -17.20 -0.19 -1.21 15 4 N -0.20 -4.28 11.63 30.63 0.36 -3.92 15 5 N -0.28 -6.80 11.17 32.42 0.36 -6.44 15 6 C 0.31 7.50 6.38 -156.82 -1.00 6.50 15 7 C 0.09 2.35 2.43 -92.92 -0.23 2.13 15 8 H 0.09 2.42 7.20 -51.93 -0.37 2.05 15 9 C -0.47 -13.09 7.90 -34.44 -0.27 -13.37 15 10 H 0.07 1.90 7.82 -52.49 -0.41 1.48 15 11 C 0.06 1.74 5.45 -17.82 -0.10 1.64 15 12 N -0.88 -25.27 12.77 55.43 0.71 -24.56 15 13 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 15 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 17 C 0.09 1.86 6.03 -3.82 -0.02 1.83 15 18 N -0.83 -16.21 9.35 -10.37 -0.10 -16.30 15 19 N -0.47 -10.60 10.37 -6.84 -0.07 -10.67 15 20 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.08 0.74 8.10 -51.93 -0.42 0.32 15 23 H 0.17 2.08 8.06 -52.49 -0.42 1.65 15 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 25 H -0.01 -0.18 8.14 -51.93 -0.42 -0.60 15 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 27 H 0.34 6.38 8.99 -39.29 -0.35 6.03 15 28 H 0.32 5.17 9.08 -39.29 -0.36 4.81 15 LS Contribution 252.57 15.07 3.81 3.81 Total: -1.00 -31.83 252.57 -5.12 -36.95 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.16 Total: 5.65 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.00 Total: -1.49 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 1.26 Total: -61.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.83 -5.12 -36.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526553.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.331 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds