Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38760 * 120.63050 * 2 1 4 4 N 1.32199 * 119.11646 * 179.72618 * 3 2 1 5 5 N 1.28740 * 120.39027 * 0.27920 * 4 3 2 6 6 C 1.31978 * 121.35778 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.55947 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46770 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47088 * 60.00884 * 7 6 5 10 10 H 1.07999 * 119.99994 * 275.10034 * 9 7 6 11 11 C 1.37876 * 120.00137 * 95.10053 * 9 7 6 12 12 N 1.31518 * 120.00261 * 5.37722 * 11 9 7 13 13 Si 1.86801 * 119.99839 * 185.37541 * 11 9 7 14 14 H 1.48498 * 109.47316 * 90.00354 * 13 11 9 15 15 H 1.48506 * 109.47011 * 209.99942 * 13 11 9 16 16 H 1.48495 * 109.47483 * 329.99755 * 13 11 9 17 17 C 1.53001 * 109.47786 * 300.00411 * 7 6 5 18 18 N 1.46899 * 109.47186 * 185.31261 * 17 7 6 19 19 N 1.32043 * 120.87550 * 0.02562 * 6 5 4 20 20 H 1.09006 * 109.47340 * 89.99408 * 1 2 3 21 21 H 1.08998 * 109.47172 * 209.99873 * 1 2 3 22 22 H 1.09003 * 109.47298 * 329.99693 * 1 2 3 23 23 H 1.08000 * 120.44602 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00028 * 180.02562 * 12 11 9 25 25 H 1.08998 * 109.46869 * 305.31895 * 17 7 6 26 26 H 1.08999 * 109.46531 * 65.31380 * 17 7 6 27 27 H 1.00904 * 110.99745 * 56.05074 * 18 17 7 28 28 H 1.00899 * 110.99559 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1940 0.0000 4 7 3.5355 1.1591 0.0055 5 7 4.1572 0.0317 0.0054 6 6 3.5020 -1.1139 0.0003 7 6 4.2709 -2.4100 -0.0002 8 1 3.5723 -3.2468 -0.0051 9 6 5.1337 -2.4828 1.2332 10 1 6.1103 -2.0216 1.2370 11 6 4.6764 -3.1380 2.3569 12 7 3.5345 -3.7895 2.3192 13 14 5.6788 -3.1005 3.9327 14 1 5.2698 -1.9313 4.7519 15 1 5.4417 -4.3496 4.7000 16 1 7.1216 -2.9908 3.5992 17 6 5.1558 -2.4778 -1.2464 18 7 5.8079 -3.7924 -1.3131 19 7 2.1819 -1.1395 -0.0053 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6916 2.1393 -0.0004 24 1 3.2127 -4.2501 3.1098 25 1 4.5429 -2.3306 -2.1356 26 1 5.9153 -1.6976 -1.1954 27 1 5.1257 -4.5357 -1.2962 28 1 6.3981 -3.8623 -2.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260526553.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = 38.109491 kcal Electronic energy + Delta-G solvation = -13470.547734 eV Core-core repulsion = 11134.969973 eV Total energy + Delta-G solvation = -2335.577760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.59820 -37.36220 -36.13008 -34.32569 -34.08151 -30.48942 -29.75730 -26.56644 -25.50706 -24.40593 -21.85862 -19.74204 -18.48311 -17.30366 -16.95972 -16.77494 -16.42968 -15.57555 -15.06852 -14.60506 -14.14809 -14.04409 -13.59293 -13.37381 -12.90773 -12.87195 -12.71576 -12.61790 -12.19637 -12.05887 -11.51363 -11.25754 -10.66671 -10.58487 -10.05861 -9.33300 -8.17784 -6.23039 -0.22504 -0.01486 1.36808 1.38086 1.49973 2.39074 2.67505 2.87887 3.00652 3.25915 3.45116 3.88965 4.05328 4.22559 4.42785 4.48869 4.70972 4.76941 4.88451 4.96251 5.04161 5.34049 5.56058 5.73285 6.14743 6.26406 6.47055 6.85018 6.86950 7.39309 7.73802 8.89726 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.012186 C = 0.010402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.767555 B = 2297.259228 C = 2691.124982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.137 3.863 3 C -0.035 4.035 4 N -0.228 5.228 5 N -0.317 5.317 6 C 0.287 3.713 7 C 0.096 3.904 8 H 0.059 0.941 9 C -0.482 4.482 10 H 0.049 0.951 11 C 0.017 3.983 12 N -0.909 5.909 13 Si 0.950 3.050 14 H -0.286 1.286 15 H -0.277 1.277 16 H -0.266 1.266 17 C 0.097 3.903 18 N -0.835 5.835 19 N -0.502 5.502 20 H 0.112 0.888 21 H 0.074 0.926 22 H 0.120 0.880 23 H 0.227 0.773 24 H 0.262 0.738 25 H 0.003 0.997 26 H 0.057 0.943 27 H 0.340 0.660 28 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 6.232 -5.639 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.021 4.021 3 C -0.205 4.205 4 N -0.075 5.075 5 N -0.164 5.164 6 C 0.019 3.981 7 C 0.074 3.926 8 H 0.078 0.922 9 C -0.521 4.521 10 H 0.068 0.932 11 C -0.183 4.183 12 N -0.547 5.547 13 Si 0.776 3.224 14 H -0.213 1.213 15 H -0.202 1.202 16 H -0.190 1.190 17 C -0.035 4.035 18 N -0.365 5.365 19 N -0.224 5.224 20 H 0.130 0.870 21 H 0.093 0.907 22 H 0.138 0.862 23 H 0.244 0.756 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.232 6.273 -4.847 9.498 hybrid contribution -0.902 -0.220 0.179 0.945 sum -6.133 6.053 -4.668 9.800 Atomic orbital electron populations 1.20952 0.83340 1.05557 1.05504 1.23667 1.01341 0.89054 0.88020 1.25513 0.93147 1.02199 0.99675 1.73486 1.09592 1.19246 1.05126 1.73506 1.32781 0.95764 1.14343 1.25911 0.88158 0.97829 0.86188 1.17783 0.93259 0.86687 0.94847 0.92248 1.20875 1.01024 1.33453 0.96751 0.93232 1.25714 0.96245 0.94553 1.01792 1.70050 1.21502 1.33275 1.29859 0.85667 0.79749 0.77213 0.79746 1.21295 1.20185 1.19035 1.21482 0.95834 0.92080 0.94055 1.58337 1.27145 1.03262 1.47755 1.68992 1.09408 1.31338 1.12614 0.87023 0.90742 0.86167 0.75650 0.92897 0.97869 0.92438 0.84731 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.23 71.24 0.73 -1.24 15 2 C 0.14 4.59 6.83 42.59 0.29 4.88 15 3 C -0.04 -1.10 11.05 84.76 0.94 -0.16 15 4 N -0.23 -9.44 11.63 -57.01 -0.66 -10.10 15 5 N -0.32 -15.43 11.17 -51.35 -0.57 -16.00 15 6 C 0.29 14.27 6.38 138.62 0.88 15.15 15 7 C 0.10 4.98 2.43 -12.28 -0.03 4.95 15 8 H 0.06 3.38 7.20 -2.39 -0.02 3.37 15 9 C -0.48 -27.42 7.90 25.60 0.20 -27.22 15 10 H 0.05 2.91 7.82 -2.91 -0.02 2.89 15 11 C 0.02 0.97 5.45 84.65 0.46 1.43 15 12 N -0.91 -53.27 12.77 21.45 0.27 -53.00 15 13 Si 0.95 45.76 29.54 68.60 2.03 47.78 15 14 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 15 17 C 0.10 4.30 6.03 86.30 0.52 4.82 15 18 N -0.83 -32.87 9.35 -186.72 -1.75 -34.62 15 19 N -0.50 -22.60 10.37 -175.56 -1.82 -24.42 15 20 H 0.11 1.75 8.14 -2.38 -0.02 1.73 15 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.12 1.52 8.10 -2.39 -0.02 1.50 15 23 H 0.23 4.21 8.06 -2.91 -0.02 4.18 15 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 15 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 15 26 H 0.06 2.63 8.14 -2.39 -0.02 2.61 15 27 H 0.34 13.05 8.99 -89.69 -0.81 12.25 15 28 H 0.34 10.83 9.08 -89.69 -0.81 10.01 15 Total: -1.00 -71.55 252.57 1.06 -70.49 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.43 Total: 17.25 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 4.00 Total: 2.62 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -4.53 Total: -138.14 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.55 1.06 -70.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526553.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.601 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds