Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30914 * 126.48497 * 2 1 4 4 N 1.28984 * 109.75710 * 179.91640 * 3 2 1 5 5 C 1.29630 * 109.47592 * 359.95857 * 4 3 2 6 6 N 1.34418 * 126.48049 * 179.97438 * 2 1 3 7 7 C 1.46307 * 129.76024 * 0.28512 * 6 2 1 8 8 C 1.53456 * 108.18147 * 163.64056 * 7 6 2 9 9 H 1.09006 * 109.37725 * 289.53720 * 8 7 6 10 10 C 1.50691 * 109.42952 * 169.66950 * 8 7 6 11 11 H 1.08006 * 120.00306 * 359.72601 * 10 8 7 12 12 C 1.37878 * 120.00273 * 179.72480 * 10 8 7 13 13 N 1.31522 * 120.00013 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 120.00266 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47090 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46845 * 119.99989 * 14 12 10 17 17 H 1.48503 * 109.47026 * 239.99885 * 14 12 10 18 18 N 1.46973 * 109.74150 * 49.58478 * 8 7 6 19 19 C 1.47384 * 111.24932 * 289.26169 * 18 8 7 20 20 H 1.09005 * 109.47090 * 90.02066 * 1 2 3 21 21 H 1.09000 * 109.47271 * 210.02663 * 1 2 3 22 22 H 1.08995 * 109.46940 * 330.02435 * 1 2 3 23 23 H 1.09000 * 109.72358 * 283.30577 * 7 6 2 24 24 H 1.09003 * 109.72122 * 43.96281 * 7 6 2 25 25 H 0.96994 * 120.00153 * 180.02562 * 13 12 10 26 26 H 1.00900 * 110.99797 * 53.39287 * 18 8 7 27 27 H 1.09000 * 109.75246 * 290.43253 * 19 18 8 28 28 H 1.09003 * 109.75615 * 169.69343 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2855 1.0526 0.0000 4 7 3.5207 0.6813 0.0018 5 6 3.5829 -0.6135 0.0039 6 7 2.3062 -1.0808 0.0005 7 6 1.9582 -2.5019 -0.0045 8 6 3.2048 -3.2987 -0.4121 9 1 3.4150 -3.1263 -1.4678 10 6 2.9577 -4.7675 -0.1836 11 1 2.0111 -5.1002 0.2160 12 6 3.9402 -5.6869 -0.4846 13 7 5.0932 -5.2819 -0.9707 14 14 3.6337 -7.5078 -0.2019 15 1 2.2681 -7.7002 0.3489 16 1 3.7555 -8.2361 -1.4903 17 1 4.6340 -8.0345 0.7610 18 7 4.3559 -2.8656 0.3925 19 6 4.7943 -1.5109 0.0118 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 1.6374 -2.8055 0.9920 24 1 1.1562 -2.6817 -0.7205 25 1 5.7842 -5.9286 -1.1828 26 1 4.1467 -2.9142 1.3784 27 1 5.2419 -1.5342 -0.9818 28 1 5.5213 -1.1420 0.7354 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260830426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = 60.714784 kcal Electronic energy + Delta-G solvation = -13717.828186 eV Core-core repulsion = 11383.230664 eV Total energy + Delta-G solvation = -2334.597521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.26733 -38.64014 -35.25459 -34.58101 -32.53506 -31.37247 -28.60770 -27.07336 -25.64344 -23.59183 -22.14509 -20.96355 -18.88857 -17.56635 -17.31251 -16.51522 -16.02958 -15.74950 -15.44712 -14.84180 -14.36372 -14.08384 -13.62170 -13.44667 -13.16678 -12.93364 -12.80987 -12.56408 -12.41701 -11.96756 -11.36440 -11.21345 -11.01832 -10.57764 -10.00013 -9.13590 -8.04292 -6.26931 0.83875 1.47669 1.50674 1.58655 1.62137 1.76498 2.46990 3.14934 3.30022 3.54312 3.67047 3.82211 4.01703 4.14847 4.42558 4.51491 4.60307 4.64132 4.82477 4.92752 5.07143 5.17584 5.21356 5.72164 5.85751 6.04340 6.39079 6.71267 6.94938 7.47769 7.68198 9.00858 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054836 B = 0.009381 C = 0.008212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.490741 B = 2984.027371 C = 3408.645348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.173 3.827 3 N -0.349 5.349 4 N -0.330 5.330 5 C 0.136 3.864 6 N -0.469 5.469 7 C 0.082 3.918 8 C 0.216 3.784 9 H 0.013 0.987 10 C -0.550 4.550 11 H 0.070 0.930 12 C 0.041 3.959 13 N -0.877 5.877 14 Si 0.955 3.045 15 H -0.263 1.263 16 H -0.286 1.286 17 H -0.286 1.286 18 N -0.652 5.652 19 C 0.149 3.851 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.105 0.895 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.258 0.742 26 H 0.331 0.669 27 H 0.084 0.916 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 2.814 2.619 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 N -0.190 5.190 4 N -0.169 5.169 5 C -0.136 4.136 6 N -0.159 5.159 7 C -0.042 4.042 8 C 0.108 3.892 9 H 0.031 0.969 10 C -0.588 4.588 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.512 5.512 14 Si 0.781 3.219 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.212 1.212 18 N -0.280 5.280 19 C 0.016 3.984 20 H 0.118 0.882 21 H 0.115 0.885 22 H 0.124 0.876 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.102 0.898 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.783 3.857 2.149 8.093 hybrid contribution -0.770 -1.576 0.275 1.776 sum -7.553 2.281 2.424 8.253 Atomic orbital electron populations 1.20402 0.80331 1.05822 1.05336 1.25553 0.98942 0.82431 1.02630 1.74329 0.96508 1.25492 1.22660 1.73801 1.13035 1.09544 1.20537 1.26485 0.90236 0.92792 1.04073 1.46410 1.06572 1.09842 1.53061 1.23167 1.02725 0.73909 1.04355 1.19338 0.83050 0.93782 0.93076 0.96865 1.21087 1.01250 0.89823 1.46675 0.91190 1.25654 0.94648 1.02463 0.93699 1.70208 1.05057 1.34925 1.41009 0.85585 0.78413 0.80522 0.77405 1.18656 1.21252 1.21234 1.60972 1.40039 1.18904 1.08042 1.20865 0.89481 0.84611 1.03419 0.88170 0.88540 0.87600 0.88470 0.87656 0.93296 0.85121 0.89779 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 10.31 71.24 0.73 -0.53 15 2 C 0.17 5.86 8.08 138.21 1.12 6.97 15 3 N -0.35 -14.15 12.24 -50.58 -0.62 -14.77 15 4 N -0.33 -14.22 12.20 -50.27 -0.61 -14.84 15 5 C 0.14 5.48 7.86 138.11 1.09 6.57 15 6 N -0.47 -17.14 3.12 -504.45 -1.57 -18.71 15 7 C 0.08 2.84 6.22 86.57 0.54 3.38 15 8 C 0.22 9.48 2.29 44.31 0.10 9.58 15 9 H 0.01 0.68 8.08 -2.38 -0.02 0.66 15 10 C -0.55 -26.10 8.74 25.60 0.22 -25.88 15 11 H 0.07 3.14 7.74 -2.91 -0.02 3.11 15 12 C 0.04 2.03 5.39 84.65 0.46 2.48 15 13 N -0.88 -47.18 12.77 21.45 0.27 -46.91 15 14 Si 0.95 39.55 29.54 68.60 2.03 41.57 15 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 16 H -0.29 -11.92 7.11 99.48 0.71 -11.21 15 17 H -0.29 -11.96 7.11 99.48 0.71 -11.25 15 18 N -0.65 -27.84 5.81 -497.22 -2.89 -30.73 15 19 C 0.15 5.80 6.99 85.49 0.60 6.40 15 20 H 0.10 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.10 1.66 8.08 -2.39 -0.02 1.64 15 22 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.10 3.10 8.12 -2.39 -0.02 3.08 15 24 H 0.11 3.26 8.14 -2.39 -0.02 3.24 15 25 H 0.26 13.36 8.31 -92.71 -0.77 12.58 15 26 H 0.33 13.35 8.79 -89.69 -0.79 12.56 15 27 H 0.08 3.44 8.14 -2.39 -0.02 3.42 15 28 H 0.11 3.79 8.14 -2.39 -0.02 3.77 15 Total: -1.00 -61.57 242.71 1.85 -59.72 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.38 Total: 15.67 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.86 Total: 8.98 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -5.42 Total: -125.95 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -61.57 1.85 -59.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.439 kcal (2) G-P(sol) polarization free energy of solvation -61.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds