Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39994 * 126.03307 * 2 1 4 4 C 1.30733 * 108.22086 * 179.97438 * 3 2 1 5 5 C 1.40173 * 108.23620 * 0.02562 * 4 3 2 6 6 C 1.35135 * 107.86332 * 359.77238 * 5 4 3 7 7 C 1.51318 * 110.30995 * 180.27509 * 6 5 4 8 8 C 1.54441 * 104.99059 * 17.06369 * 7 6 5 9 9 C 1.51363 * 141.88975 * 179.97438 * 5 4 3 10 10 O 1.42903 * 110.33917 * 281.99270 * 9 5 4 11 11 C 1.50701 * 110.33351 * 44.23286 * 9 5 4 12 12 H 1.07999 * 120.00229 * 24.91898 * 11 9 5 13 13 C 1.37877 * 119.99991 * 204.91552 * 11 9 5 14 14 N 1.31512 * 120.00240 * 173.95845 * 13 11 9 15 15 Si 1.86806 * 119.99927 * 353.96048 * 13 11 9 16 16 H 1.48496 * 109.46999 * 87.09618 * 15 13 11 17 17 H 1.48501 * 109.47229 * 207.09627 * 15 13 11 18 18 H 1.48499 * 109.47083 * 327.09469 * 15 13 11 19 19 H 1.09000 * 109.47431 * 90.02415 * 1 2 3 20 20 H 1.08995 * 109.47267 * 330.02582 * 1 2 3 21 21 H 1.09004 * 109.46795 * 210.02144 * 1 2 3 22 22 H 1.08002 * 125.88639 * 180.02562 * 4 3 2 23 23 H 1.09000 * 110.33844 * 135.94666 * 7 6 5 24 24 H 1.09002 * 110.33536 * 258.18703 * 7 6 5 25 25 H 1.09005 * 110.92707 * 92.45439 * 8 7 6 26 26 H 1.09005 * 110.92810 * 216.07157 * 8 7 6 27 27 H 0.96700 * 113.99397 * 56.18333 * 10 9 5 28 28 H 0.96999 * 120.00466 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2885 1.1321 0.0000 4 6 3.5331 0.7322 0.0006 5 6 3.5435 -0.6695 0.0003 6 6 2.2604 -1.0935 0.0047 7 6 2.2070 -2.6057 0.0115 8 6 3.6191 -3.0534 0.4485 9 6 4.4865 -1.8535 0.0002 10 8 5.0137 -2.0684 -1.3105 11 6 5.6047 -1.6325 0.9860 12 1 5.4600 -0.9709 1.8273 13 6 6.8124 -2.2750 0.8140 14 7 7.8257 -1.9928 1.6034 15 14 7.0094 -3.5463 -0.5405 16 1 7.4026 -2.8687 -1.8019 17 1 8.0601 -4.5221 -0.1545 18 1 5.7221 -4.2588 -0.7417 19 1 -0.3634 -0.0004 -1.0276 20 1 -0.3633 0.8902 0.5134 21 1 -0.3633 -0.8898 0.5142 22 1 4.4035 1.3716 0.0011 23 1 1.4610 -2.9553 0.7252 24 1 1.9826 -2.9814 -0.9868 25 1 3.6664 -3.1931 1.5285 26 1 3.9182 -3.9625 -0.0733 27 1 5.4610 -1.2975 -1.6857 28 1 8.6755 -2.4446 1.4822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260895798.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = 44.579942 kcal Electronic energy + Delta-G solvation = -13893.070007 eV Core-core repulsion = 11525.480075 eV Total energy + Delta-G solvation = -2367.589932 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.96360 -37.02541 -33.52522 -32.69631 -32.16229 -27.94240 -27.46452 -25.87541 -23.37670 -21.05929 -19.38111 -18.98618 -17.34402 -16.27921 -15.19160 -14.90071 -14.44015 -13.70456 -13.55568 -12.99989 -12.54910 -12.50131 -12.20398 -12.07228 -11.60778 -11.52739 -10.83832 -10.74723 -10.32939 -10.13490 -9.93579 -9.08260 -8.70706 -8.50039 -8.31833 -7.63013 -6.03930 -4.12986 2.38553 2.85090 3.44735 3.54726 3.61648 3.78703 4.61453 4.77790 4.96100 5.27027 5.28613 5.43920 5.48030 5.55522 5.68384 5.77124 5.96837 6.08733 6.40809 6.73622 6.77651 6.91080 7.22979 7.32947 7.53569 7.68653 8.27201 8.31275 8.80487 9.00744 9.59157 11.05777 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.050811 B = 0.011616 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.932629 B = 2409.916289 C = 2644.490715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.372 5.372 3 N -0.311 5.311 4 C 0.079 3.921 5 C -0.235 4.235 6 C 0.041 3.959 7 C -0.041 4.041 8 C -0.102 4.102 9 C 0.289 3.711 10 O -0.562 6.562 11 C -0.545 4.545 12 H 0.077 0.923 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.947 3.053 16 H -0.294 1.294 17 H -0.328 1.328 18 H -0.269 1.269 19 H 0.065 0.935 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.180 0.820 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.370 0.630 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 -0.035 -4.199 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.156 5.156 3 N -0.132 5.132 4 C -0.107 4.107 5 C -0.246 4.246 6 C -0.086 4.086 7 C -0.080 4.080 8 C -0.140 4.140 9 C 0.248 3.752 10 O -0.370 6.370 11 C -0.582 4.582 12 H 0.095 0.905 13 C -0.133 4.133 14 N -0.532 5.532 15 Si 0.782 3.218 16 H -0.221 1.221 17 H -0.260 1.260 18 H -0.195 1.195 19 H 0.084 0.916 20 H 0.100 0.900 21 H 0.098 0.902 22 H 0.197 0.803 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.218 0.782 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.974 0.383 -4.041 13.594 hybrid contribution 0.876 -0.523 -0.627 1.197 sum -12.098 -0.140 -4.667 12.968 Atomic orbital electron populations 1.21678 0.75687 1.03657 1.02458 1.47835 1.05438 1.02692 1.59599 1.77274 1.01508 1.07115 1.27290 1.23335 0.94407 0.94477 0.98438 1.21932 0.95698 0.94608 1.12352 1.21904 0.91902 0.92600 1.02152 1.20804 1.00056 0.85693 1.01491 1.22728 0.90576 0.99085 1.01648 1.18126 0.90011 0.86143 0.80908 1.86091 1.75357 1.41290 1.34228 1.21340 0.96137 1.29482 1.11276 0.90541 1.25125 0.95224 0.96501 0.96470 1.69985 1.02229 1.41902 1.39086 0.85743 0.75846 0.79963 0.80206 1.22126 1.26009 1.19493 0.91622 0.89963 0.90195 0.80287 0.91606 0.90449 0.89625 0.90335 0.78238 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.47 59.84 0.69 1.97 15 2 N -0.37 -6.62 4.02 -63.65 -0.26 -6.87 15 3 N -0.31 -6.13 12.57 30.67 0.39 -5.74 15 4 C 0.08 1.61 12.03 -17.29 -0.21 1.40 15 5 C -0.23 -5.08 5.82 -104.68 -0.61 -5.69 15 6 C 0.04 0.79 7.58 -81.90 -0.62 0.17 15 7 C -0.04 -0.69 6.78 -26.82 -0.18 -0.88 15 8 C -0.10 -2.08 5.90 -25.08 -0.15 -2.23 15 9 C 0.29 6.68 0.75 -91.71 -0.07 6.61 15 10 O -0.56 -12.72 8.51 -35.23 -0.30 -13.02 15 11 C -0.54 -14.97 8.71 -34.44 -0.30 -15.27 15 12 H 0.08 2.33 8.06 -52.49 -0.42 1.91 15 13 C 0.07 1.99 5.46 -17.82 -0.10 1.90 15 14 N -0.90 -27.15 13.96 55.43 0.77 -26.37 15 15 Si 0.95 23.69 24.86 -169.99 -4.23 19.47 15 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 15 17 H -0.33 -8.43 7.11 56.52 0.40 -8.03 15 18 H -0.27 -6.50 5.27 56.52 0.30 -6.20 15 19 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.18 3.32 8.06 -52.49 -0.42 2.89 15 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.09 1.76 7.91 -51.93 -0.41 1.35 15 26 H 0.08 1.60 6.53 -51.93 -0.34 1.26 15 27 H 0.37 7.59 8.98 45.56 0.41 8.00 15 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -32.98 236.45 -4.15 -37.12 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -2.54 Total: 3.88 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.55 Total: -12.02 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.90 Total: -38.99 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.30 Total: -13.02 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.23 Total: 19.47 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.98 -4.15 -37.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260895798.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.701 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds