Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.82331 * 2 1 4 4 C 1.54447 * 110.92668 * 236.28270 * 2 1 3 5 5 C 1.51325 * 104.98980 * 267.54982 * 4 2 1 6 6 N 1.35214 * 141.94654 * 163.09996 * 5 4 2 7 7 H 0.97005 * 126.03286 * 359.94650 * 6 5 4 8 8 N 1.40003 * 107.93884 * 180.02562 * 6 5 4 9 9 C 1.30733 * 108.21136 * 359.94555 * 8 6 5 10 10 C 1.35141 * 110.30553 * 343.07102 * 5 4 2 11 11 C 1.51357 * 110.24686 * 359.97438 * 10 5 4 12 12 O 1.42900 * 110.41871 * 135.86246 * 11 10 5 13 13 C 1.50697 * 110.33692 * 258.05125 * 11 10 5 14 14 H 1.07998 * 119.99872 * 110.43302 * 13 11 10 15 15 C 1.37881 * 120.00028 * 290.43711 * 13 11 10 16 16 N 1.31517 * 119.99903 * 5.89995 * 15 13 11 17 17 Si 1.86802 * 119.99815 * 185.90228 * 15 13 11 18 18 H 1.48503 * 109.46644 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46984 * 299.99677 * 17 15 13 20 20 H 1.48498 * 109.47156 * 59.99975 * 17 15 13 21 21 H 1.09002 * 109.47325 * 296.32616 * 1 2 3 22 22 H 1.09004 * 109.46690 * 56.32276 * 1 2 3 23 23 H 1.08994 * 109.47285 * 176.32280 * 1 2 3 24 24 H 1.08993 * 110.33507 * 26.42383 * 4 2 1 25 25 H 1.08992 * 110.33633 * 148.56908 * 4 2 1 26 26 H 1.08005 * 125.87832 * 180.02562 * 9 8 6 27 27 H 0.96698 * 114.00455 * 56.26872 * 12 11 10 28 28 H 0.97001 * 120.00078 * 6.34881 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0816 -0.8008 -1.1999 5 6 2.2798 -2.2061 -0.6748 6 7 2.4600 -3.4812 -1.0869 7 1 2.5023 -3.7826 -2.0080 8 7 2.5731 -4.2900 0.0502 9 6 2.4657 -3.5272 1.1065 10 6 2.2798 -2.2061 0.6766 11 6 2.0821 -0.7998 1.2004 12 8 1.1398 -0.7958 2.2747 13 6 3.3968 -0.2211 1.6561 14 1 3.8552 0.5824 1.0988 15 6 4.0144 -0.7175 2.7845 16 7 3.5179 -1.7703 3.3966 17 14 5.5563 0.1055 3.4438 18 1 6.0215 -0.6142 4.6566 19 1 6.6191 0.0682 2.4073 20 1 5.2538 1.5170 3.7920 21 1 -0.3634 0.4557 0.9211 22 1 -0.3633 0.5699 -0.8552 23 1 -0.3633 -1.0255 -0.0659 24 1 1.3620 -0.8003 -2.0186 25 1 3.0314 -0.3810 -1.5310 26 1 2.5121 -3.8581 2.1336 27 1 1.3750 -1.3824 3.0065 28 1 2.7733 -2.2529 3.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260898838.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = 33.009218 kcal Electronic energy + Delta-G solvation = -14231.854248 eV Core-core repulsion = 11863.762572 eV Total energy + Delta-G solvation = -2368.091676 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.85175 -37.11194 -34.07049 -32.01561 -30.53863 -29.23441 -26.54807 -25.71947 -22.83944 -20.99299 -19.48012 -18.76146 -17.80981 -16.56960 -14.69745 -14.39421 -13.92860 -13.49177 -13.30087 -13.07662 -12.66000 -12.28248 -11.93839 -11.32413 -11.02405 -10.87093 -10.64740 -10.50217 -10.26957 -10.04349 -9.98382 -9.34102 -8.74698 -8.48404 -8.27521 -7.31010 -6.40035 -4.21563 2.61153 3.36502 3.41365 3.42480 3.61093 3.73119 4.47724 5.09411 5.20303 5.42413 5.62626 5.70304 5.91561 6.05479 6.09146 6.24907 6.35907 6.43284 6.50820 6.89648 6.92427 7.10119 7.28150 7.53041 7.98476 8.03014 8.28942 8.42861 8.72025 9.15233 9.51289 10.89029 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.015230 C = 0.012669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.807356 B = 1838.011769 C = 2209.618866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 H 0.084 0.916 4 C -0.027 4.027 5 C 0.026 3.974 6 N -0.475 5.475 7 H 0.425 0.575 8 N -0.310 5.310 9 C 0.074 3.926 10 C -0.222 4.222 11 C 0.305 3.695 12 O -0.583 6.583 13 C -0.603 4.603 14 H 0.056 0.944 15 C 0.035 3.965 16 N -0.907 5.907 17 Si 1.065 2.935 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.286 1.286 21 H 0.065 0.935 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.178 0.822 27 H 0.368 0.632 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 1.091 -6.940 7.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.087 4.087 3 H 0.102 0.898 4 C -0.067 4.067 5 C -0.102 4.102 6 N -0.184 5.184 7 H 0.266 0.734 8 N -0.132 5.132 9 C -0.111 4.111 10 C -0.234 4.234 11 C 0.265 3.735 12 O -0.391 6.391 13 C -0.641 4.641 14 H 0.074 0.926 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.893 3.107 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.212 1.212 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.195 0.805 27 H 0.217 0.783 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.705 0.299 -6.465 6.693 hybrid contribution -0.559 0.073 -1.181 1.309 sum -2.264 0.372 -7.646 7.983 Atomic orbital electron populations 1.21522 0.95128 1.00977 1.00751 1.21882 0.95166 0.98879 0.92794 0.89810 1.20690 1.00963 0.87066 0.97972 1.21614 1.03749 0.88080 0.96708 1.45529 1.61361 1.03650 1.07838 0.73372 1.77191 1.26911 1.17764 0.91367 1.23428 0.98564 0.91333 0.97815 1.22347 1.09561 0.97241 0.94234 1.17872 0.87504 0.84484 0.83654 1.86268 1.51173 1.69715 1.31937 1.22396 1.06196 1.20970 1.14571 0.92609 1.25785 1.01775 0.95602 0.93813 1.70924 1.26483 1.17593 1.39816 0.83611 0.75004 0.75678 0.76395 1.20619 1.21586 1.21228 0.91630 0.94293 0.93457 0.91784 0.90191 0.80475 0.78270 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.59 37.16 0.32 -1.98 15 2 C -0.07 -1.39 3.17 -89.10 -0.28 -1.67 15 3 H 0.08 1.68 7.78 -51.93 -0.40 1.28 15 4 C -0.03 -0.50 6.33 -26.82 -0.17 -0.67 15 5 C 0.03 0.54 8.07 -81.90 -0.66 -0.13 15 6 N -0.48 -9.09 7.36 33.65 0.25 -8.84 15 7 H 0.42 6.28 8.96 -182.67 -1.64 4.64 15 8 N -0.31 -6.74 12.69 30.67 0.39 -6.35 15 9 C 0.07 1.73 11.00 -17.29 -0.19 1.54 15 10 C -0.22 -5.29 5.07 -104.68 -0.53 -5.82 15 11 C 0.31 7.50 0.74 -91.84 -0.07 7.43 15 12 O -0.58 -14.83 11.49 -35.23 -0.40 -15.23 15 13 C -0.60 -16.33 8.18 -34.44 -0.28 -16.61 15 14 H 0.06 1.49 7.64 -52.49 -0.40 1.09 15 15 C 0.03 0.96 5.29 -17.82 -0.09 0.86 15 16 N -0.91 -25.37 12.83 55.43 0.71 -24.66 15 17 Si 1.07 24.47 29.91 -169.99 -5.08 19.39 15 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 21 H 0.06 1.26 7.50 -51.93 -0.39 0.87 15 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 23 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 24 H 0.06 0.95 7.91 -51.93 -0.41 0.54 15 25 H 0.08 1.38 8.14 -51.93 -0.42 0.95 15 26 H 0.18 4.05 6.88 -52.48 -0.36 3.68 15 27 H 0.37 9.47 6.22 45.56 0.28 9.75 15 28 H 0.27 7.28 2.62 -40.82 -0.11 7.17 15 LS Contribution 231.98 15.07 3.50 3.50 Total: -1.00 -30.61 231.98 -6.09 -36.70 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -3.49 Total: 12.56 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.96 Total: -17.05 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 1.35 Total: -39.86 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.40 Total: -15.23 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.61 -6.09 -36.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898838.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.713 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds