Wall clock time and date at job start Mon Mar 30 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.81981 * 2 1 4 4 C 1.54439 * 110.95952 * 123.70092 * 2 1 3 5 5 C 1.51321 * 104.99171 * 92.46849 * 4 2 1 6 6 N 1.35225 * 141.95052 * 196.88671 * 5 4 2 7 7 H 0.97006 * 126.02616 * 0.02562 * 6 5 4 8 8 N 1.39997 * 107.93921 * 180.02562 * 6 5 4 9 9 C 1.30728 * 108.21487 * 0.02562 * 8 6 5 10 10 C 1.35143 * 110.30886 * 16.92785 * 5 4 2 11 11 C 1.51369 * 110.24326 * 0.02562 * 10 5 4 12 12 O 1.42897 * 110.42022 * 101.98872 * 11 10 5 13 13 C 1.50700 * 110.33057 * 224.18174 * 11 10 5 14 14 H 1.07998 * 120.00101 * 20.19611 * 13 11 10 15 15 C 1.37878 * 119.99583 * 200.19359 * 13 11 10 16 16 N 1.31514 * 120.00215 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99700 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47531 * 60.00231 * 17 15 13 19 19 H 1.48501 * 109.47008 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47332 * 300.00305 * 17 15 13 21 21 H 1.09003 * 109.47183 * 183.51142 * 1 2 3 22 22 H 1.08995 * 109.47315 * 303.51348 * 1 2 3 23 23 H 1.08998 * 109.46905 * 63.52064 * 1 2 3 24 24 H 1.08998 * 110.34048 * 211.34490 * 4 2 1 25 25 H 1.08999 * 110.33430 * 333.59246 * 4 2 1 26 26 H 1.08005 * 125.88423 * 179.97438 * 9 8 6 27 27 H 0.96706 * 113.99352 * 64.36819 * 12 11 10 28 28 H 0.96999 * 119.99716 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0824 -0.8002 1.1998 5 6 2.2812 -2.2055 0.6749 6 7 2.4625 -3.4805 1.0872 7 1 2.5058 -3.7816 2.0084 8 7 2.5767 -4.2893 -0.0498 9 6 2.4683 -3.5268 -1.1061 10 6 2.2808 -2.2058 -0.6765 11 6 2.0821 -0.7997 -1.2005 12 8 3.3272 -0.2488 -1.6346 13 6 1.0869 -0.7984 -2.3322 14 1 0.3983 -1.6224 -2.4466 15 6 1.0556 0.2549 -3.2214 16 7 1.8945 1.2581 -3.0822 17 14 -0.1784 0.2569 -4.6237 18 1 -1.5561 0.2130 -4.0709 19 1 -0.0078 1.4912 -5.4314 20 1 0.0478 -0.9323 -5.4839 21 1 -0.3634 -1.0258 0.0629 22 1 -0.3634 0.5674 0.8568 23 1 -0.3633 0.4582 -0.9199 24 1 3.0330 -0.3810 1.5294 25 1 1.3631 -0.8000 2.0187 26 1 2.5152 -3.8576 -2.1332 27 1 3.7209 -0.7115 -2.3870 28 1 1.8726 1.9989 -3.7080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260898845.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:13 Heat of formation + Delta-G solvation = 17.551454 kcal Electronic energy + Delta-G solvation = -14098.695646 eV Core-core repulsion = 11729.933671 eV Total energy + Delta-G solvation = -2368.761975 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.38581 -38.56557 -35.19973 -33.99429 -32.29053 -30.62510 -28.79010 -26.61115 -24.99861 -22.46601 -21.02973 -20.27516 -18.70276 -18.09710 -16.56366 -16.09049 -15.80264 -15.17872 -14.85874 -14.50702 -14.36027 -13.71014 -13.30335 -12.85100 -12.62910 -12.55160 -12.35674 -12.17213 -11.91711 -11.89752 -11.44087 -10.72835 -10.42740 -10.31742 -10.02111 -9.13800 -7.87066 -6.08454 1.01097 1.45801 1.48277 1.53769 1.88938 1.99000 2.51558 3.30182 3.70258 4.01775 4.09331 4.27491 4.50057 4.61026 4.80941 4.88493 4.95832 5.14195 5.22582 5.47638 5.64072 5.76255 5.83351 5.88808 5.92926 6.32820 6.58105 6.80866 6.90889 7.49680 7.75634 9.08714 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.012817 C = 0.011702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.809273 B = 2184.034127 C = 2392.223662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.065 4.065 3 H 0.062 0.938 4 C -0.031 4.031 5 C 0.053 3.947 6 N -0.457 5.457 7 H 0.446 0.554 8 N -0.317 5.317 9 C 0.062 3.938 10 C -0.276 4.276 11 C 0.308 3.692 12 O -0.554 6.554 13 C -0.546 4.546 14 H 0.043 0.957 15 C 0.039 3.961 16 N -0.879 5.879 17 Si 0.930 3.070 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.186 0.814 27 H 0.353 0.647 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 -3.887 7.325 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.070 4.070 5 C -0.076 4.076 6 N -0.167 5.167 7 H 0.292 0.708 8 N -0.140 5.140 9 C -0.122 4.122 10 C -0.287 4.287 11 C 0.267 3.733 12 O -0.356 6.356 13 C -0.585 4.585 14 H 0.061 0.939 15 C -0.163 4.163 16 N -0.516 5.516 17 Si 0.757 3.243 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.203 0.797 27 H 0.197 0.803 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.542 -4.487 8.152 9.321 hybrid contribution -0.557 0.234 -1.494 1.611 sum -1.099 -4.252 6.658 7.976 Atomic orbital electron populations 1.21395 0.93847 1.00246 1.00610 1.21653 0.96065 0.98075 0.92645 0.91990 1.20904 1.02393 0.85116 0.98578 1.22145 0.99951 0.89097 0.96421 1.45585 1.59462 1.03032 1.08650 0.70841 1.77166 1.27233 1.17936 0.91683 1.23514 0.98916 0.91161 0.98657 1.22360 1.13497 0.97733 0.95126 1.17756 0.82257 0.82101 0.91175 1.86370 1.37826 1.60125 1.51303 1.21570 1.19106 1.05051 1.12740 0.93881 1.25523 0.96507 0.95246 0.99057 1.70276 1.36225 1.08605 1.36485 0.86081 0.80583 0.77064 0.80594 1.20045 1.21422 1.20164 0.94300 0.92007 0.93736 0.89253 0.88185 0.79671 0.80330 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.10 8.31 71.98 0.60 -3.50 15 2 C -0.06 -2.73 3.32 -9.81 -0.03 -2.76 15 3 H 0.06 2.86 8.10 -2.39 -0.02 2.84 15 4 C -0.03 -1.02 6.33 30.53 0.19 -0.83 15 5 C 0.05 1.96 8.07 41.52 0.34 2.29 15 6 N -0.46 -14.75 7.37 -47.46 -0.35 -15.10 15 7 H 0.45 10.47 8.96 -213.38 -1.91 8.55 15 8 N -0.32 -11.77 12.69 -56.88 -0.72 -12.49 15 9 C 0.06 2.49 12.03 85.33 1.03 3.52 15 10 C -0.28 -11.87 5.87 -19.90 -0.12 -11.98 15 11 C 0.31 14.71 0.86 -11.58 -0.01 14.70 15 12 O -0.55 -28.40 11.20 -148.98 -1.67 -30.07 15 13 C -0.55 -28.41 6.15 25.60 0.16 -28.25 15 14 H 0.04 2.30 7.80 -2.91 -0.02 2.28 15 15 C 0.04 2.08 5.09 84.65 0.43 2.51 15 16 N -0.88 -48.91 11.88 21.45 0.25 -48.65 15 17 Si 0.93 42.25 29.54 68.60 2.03 44.28 15 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 21 H 0.04 1.51 8.14 -2.39 -0.02 1.50 15 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.04 2.01 6.81 -2.39 -0.02 1.99 15 24 H 0.09 2.78 8.14 -2.39 -0.02 2.76 15 25 H 0.10 2.62 7.91 -2.39 -0.02 2.60 15 26 H 0.19 6.70 8.06 -2.91 -0.02 6.68 15 27 H 0.35 17.39 9.07 -74.05 -0.67 16.72 15 28 H 0.25 13.70 8.31 -92.71 -0.77 12.93 15 Total: -1.00 -61.86 239.49 0.73 -61.13 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -1.39 Total: 25.21 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 2.58 Total: -24.31 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -0.82 Total: -76.25 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.67 Total: -30.07 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -61.86 0.73 -61.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898845.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.678 kcal (2) G-P(sol) polarization free energy of solvation -61.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds