Wall clock time and date at job start Mon Mar 30 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.81806 * 2 1 4 4 C 1.54442 * 110.95614 * 236.30115 * 2 1 3 5 5 C 1.51323 * 104.99052 * 267.52931 * 4 2 1 6 6 N 1.35223 * 141.94620 * 163.09618 * 5 4 2 7 7 H 0.96998 * 126.03361 * 359.97438 * 6 5 4 8 8 N 1.40007 * 107.93486 * 179.97438 * 6 5 4 9 9 C 1.30736 * 108.21501 * 0.02562 * 8 6 5 10 10 C 1.35136 * 110.30453 * 343.07687 * 5 4 2 11 11 C 1.51361 * 110.25122 * 359.97438 * 10 5 4 12 12 O 1.42901 * 110.33521 * 258.05305 * 11 10 5 13 13 C 1.50704 * 110.41890 * 135.86113 * 11 10 5 14 14 H 1.07994 * 120.00127 * 357.35039 * 13 11 10 15 15 C 1.37875 * 119.99636 * 177.34739 * 13 11 10 16 16 N 1.31513 * 119.99737 * 187.97492 * 15 13 11 17 17 Si 1.86799 * 120.00354 * 7.97115 * 15 13 11 18 18 H 1.48499 * 109.46861 * 84.74732 * 17 15 13 19 19 H 1.48495 * 109.47447 * 204.75028 * 17 15 13 20 20 H 1.48506 * 109.46909 * 324.74989 * 17 15 13 21 21 H 1.09004 * 109.47201 * 302.99387 * 1 2 3 22 22 H 1.08992 * 109.47193 * 62.99995 * 1 2 3 23 23 H 1.09000 * 109.46811 * 183.00202 * 1 2 3 24 24 H 1.08997 * 110.33597 * 26.40417 * 4 2 1 25 25 H 1.08996 * 110.33611 * 148.65113 * 4 2 1 26 26 H 1.07995 * 125.87874 * 180.02562 * 9 8 6 27 27 H 0.96700 * 113.99618 * 295.58023 * 12 11 10 28 28 H 0.97002 * 119.99582 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0824 -0.8002 -1.1999 5 6 2.2812 -2.2055 -0.6750 6 7 2.4622 -3.4805 -1.0874 7 1 2.5052 -3.7816 -2.0085 8 7 2.5767 -4.2893 0.0497 9 6 2.4677 -3.5269 1.1061 10 6 2.2808 -2.2057 0.6764 11 6 2.0821 -0.7997 1.2005 12 8 3.3283 -0.2503 1.6331 13 6 1.0879 -0.7964 2.3330 14 1 0.6009 -1.7145 2.6268 15 6 0.8002 0.3788 2.9942 16 7 0.0563 0.3580 4.0786 17 14 1.4669 2.0004 2.3499 18 1 0.5573 2.5278 1.3012 19 1 1.5559 2.9771 3.4649 20 1 2.8175 1.7853 1.7712 21 1 -0.3634 0.5596 0.8620 22 1 -0.3633 0.4665 -0.9156 23 1 -0.3633 -1.0263 0.0538 24 1 1.3630 -0.8000 -2.0188 25 1 3.0330 -0.3809 -1.5295 26 1 2.5146 -3.8578 2.1330 27 1 3.7221 -0.7130 2.3854 28 1 -0.1458 1.1848 4.5439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260898849.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:15 Heat of formation + Delta-G solvation = 45.313844 kcal Electronic energy + Delta-G solvation = -14206.352660 eV Core-core repulsion = 11838.794553 eV Total energy + Delta-G solvation = -2367.558107 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.01701 -37.28341 -33.79858 -32.29872 -30.87741 -29.31461 -27.35700 -25.15631 -23.07300 -21.05982 -19.86474 -18.69756 -17.05577 -16.74978 -14.83891 -14.56633 -14.29766 -13.79670 -13.25059 -13.07523 -12.87325 -12.47592 -11.85361 -11.60589 -11.13498 -10.94382 -10.72978 -10.34290 -10.21553 -10.04864 -9.90084 -8.94714 -8.83898 -8.61892 -8.24380 -7.68102 -6.09988 -4.15077 2.41267 3.17642 3.37386 3.44925 3.51111 3.69585 4.52716 4.98126 5.22206 5.31740 5.44416 5.61147 5.76862 5.94217 6.04624 6.27704 6.37750 6.50340 6.58032 6.86317 6.98577 7.17539 7.29891 7.37835 7.64294 7.82692 8.22489 8.35178 8.89263 9.07411 9.55897 11.00733 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042812 B = 0.014221 C = 0.012843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.864148 B = 1968.401128 C = 2179.658401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.037 4.037 5 C 0.042 3.958 6 N -0.473 5.473 7 H 0.427 0.573 8 N -0.308 5.308 9 C 0.078 3.922 10 C -0.227 4.227 11 C 0.289 3.711 12 O -0.573 6.573 13 C -0.537 4.537 14 H 0.075 0.925 15 C 0.086 3.914 16 N -0.891 5.891 17 Si 0.861 3.139 18 H -0.281 1.281 19 H -0.303 1.303 20 H -0.222 1.222 21 H 0.073 0.927 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.179 0.821 27 H 0.364 0.636 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -1.554 -9.189 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.076 4.076 5 C -0.086 4.086 6 N -0.181 5.181 7 H 0.269 0.731 8 N -0.131 5.131 9 C -0.108 4.108 10 C -0.238 4.238 11 C 0.248 3.752 12 O -0.380 6.380 13 C -0.574 4.574 14 H 0.093 0.907 15 C -0.118 4.118 16 N -0.528 5.528 17 Si 0.689 3.311 18 H -0.208 1.208 19 H -0.230 1.230 20 H -0.145 1.145 21 H 0.092 0.908 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.196 0.804 27 H 0.211 0.789 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.760 -2.241 -9.928 10.851 hybrid contribution 0.133 0.968 0.093 0.981 sum 3.893 -1.273 -9.835 10.654 Atomic orbital electron populations 1.21653 0.93441 1.02352 1.00226 1.21995 0.96570 0.98395 0.92932 0.90486 1.20856 1.01109 0.86866 0.98772 1.21895 1.01535 0.88194 0.96960 1.45594 1.60734 1.03718 1.08061 0.73064 1.77247 1.26930 1.17583 0.91317 1.23332 0.98359 0.91151 0.97932 1.21860 1.11359 0.97147 0.93446 1.17990 0.83045 0.82319 0.91828 1.86507 1.39035 1.59346 1.53068 1.21258 1.24491 0.96592 1.15090 0.90667 1.24946 0.93614 0.99407 0.93813 1.69964 1.37779 1.28015 1.17057 0.87352 0.82700 0.82674 0.78375 1.20762 1.23048 1.14505 0.90800 0.94894 0.92517 0.91218 0.90294 0.80400 0.78907 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 7.90 37.16 0.29 -2.15 15 2 C -0.08 -1.64 2.15 -89.10 -0.19 -1.83 15 3 H 0.08 1.61 5.73 -51.93 -0.30 1.31 15 4 C -0.04 -0.62 6.33 -26.82 -0.17 -0.79 15 5 C 0.04 0.79 8.07 -81.90 -0.66 0.13 15 6 N -0.47 -7.94 7.37 33.65 0.25 -7.69 15 7 H 0.43 5.44 8.96 -182.67 -1.64 3.80 15 8 N -0.31 -5.83 12.69 30.67 0.39 -5.44 15 9 C 0.08 1.54 12.03 -17.29 -0.21 1.34 15 10 C -0.23 -4.79 5.84 -104.67 -0.61 -5.40 15 11 C 0.29 6.56 0.66 -91.84 -0.06 6.50 15 12 O -0.57 -12.90 9.97 -35.23 -0.35 -13.25 15 13 C -0.54 -14.23 7.35 -34.44 -0.25 -14.48 15 14 H 0.08 2.21 8.01 -52.49 -0.42 1.79 15 15 C 0.09 2.36 4.66 -17.82 -0.08 2.28 15 16 N -0.89 -26.29 13.96 55.43 0.77 -25.52 15 17 Si 0.86 20.95 22.85 -169.99 -3.88 17.07 15 18 H -0.28 -6.61 6.91 56.52 0.39 -6.22 15 19 H -0.30 -7.58 7.11 56.52 0.40 -7.18 15 20 H -0.22 -5.28 5.24 56.52 0.30 -4.98 15 21 H 0.07 1.70 4.99 -51.93 -0.26 1.44 15 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.06 1.19 8.07 -51.93 -0.42 0.77 15 24 H 0.07 0.99 7.91 -51.93 -0.41 0.58 15 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.18 3.17 8.06 -52.49 -0.42 2.75 15 27 H 0.36 7.38 9.07 45.56 0.41 7.79 15 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 226.50 15.07 3.41 3.41 Total: -1.00 -31.07 226.50 -4.91 -35.98 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.55 Total: 9.85 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.95 Total: -14.41 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 1.41 Total: -38.64 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.35 Total: -13.25 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -3.88 Total: 17.07 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.07 -4.91 -35.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898849.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.295 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds