Wall clock time and date at job start Mon Mar 30 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.81806 * 2 1 4 4 C 1.54442 * 110.95614 * 236.30115 * 2 1 3 5 5 C 1.51323 * 104.99052 * 267.52931 * 4 2 1 6 6 N 1.35223 * 141.94620 * 163.09618 * 5 4 2 7 7 H 0.96998 * 126.03361 * 359.97438 * 6 5 4 8 8 N 1.40007 * 107.93486 * 179.97438 * 6 5 4 9 9 C 1.30736 * 108.21501 * 0.02562 * 8 6 5 10 10 C 1.35136 * 110.30453 * 343.07687 * 5 4 2 11 11 C 1.51361 * 110.25122 * 359.97438 * 10 5 4 12 12 O 1.42901 * 110.33521 * 258.05305 * 11 10 5 13 13 C 1.50704 * 110.41890 * 135.86113 * 11 10 5 14 14 H 1.07994 * 120.00127 * 357.35039 * 13 11 10 15 15 C 1.37875 * 119.99636 * 177.34739 * 13 11 10 16 16 N 1.31513 * 119.99737 * 187.97492 * 15 13 11 17 17 Si 1.86799 * 120.00354 * 7.97115 * 15 13 11 18 18 H 1.48499 * 109.46861 * 84.74732 * 17 15 13 19 19 H 1.48495 * 109.47447 * 204.75028 * 17 15 13 20 20 H 1.48506 * 109.46909 * 324.74989 * 17 15 13 21 21 H 1.09004 * 109.47201 * 302.99387 * 1 2 3 22 22 H 1.08992 * 109.47193 * 62.99995 * 1 2 3 23 23 H 1.09000 * 109.46811 * 183.00202 * 1 2 3 24 24 H 1.08997 * 110.33597 * 26.40417 * 4 2 1 25 25 H 1.08996 * 110.33611 * 148.65113 * 4 2 1 26 26 H 1.07995 * 125.87874 * 180.02562 * 9 8 6 27 27 H 0.96700 * 113.99618 * 295.58023 * 12 11 10 28 28 H 0.97002 * 119.99582 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0824 -0.8002 -1.1999 5 6 2.2812 -2.2055 -0.6750 6 7 2.4622 -3.4805 -1.0874 7 1 2.5052 -3.7816 -2.0085 8 7 2.5767 -4.2893 0.0497 9 6 2.4677 -3.5269 1.1061 10 6 2.2808 -2.2057 0.6764 11 6 2.0821 -0.7997 1.2005 12 8 3.3283 -0.2503 1.6331 13 6 1.0879 -0.7964 2.3330 14 1 0.6009 -1.7145 2.6268 15 6 0.8002 0.3788 2.9942 16 7 0.0563 0.3580 4.0786 17 14 1.4669 2.0004 2.3499 18 1 0.5573 2.5278 1.3012 19 1 1.5559 2.9771 3.4649 20 1 2.8175 1.7853 1.7712 21 1 -0.3634 0.5596 0.8620 22 1 -0.3633 0.4665 -0.9156 23 1 -0.3633 -1.0263 0.0538 24 1 1.3630 -0.8000 -2.0188 25 1 3.0330 -0.3809 -1.5295 26 1 2.5146 -3.8578 2.1330 27 1 3.7221 -0.7130 2.3854 28 1 -0.1458 1.1848 4.5439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260898849.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:15 Heat of formation + Delta-G solvation = 20.269951 kcal Electronic energy + Delta-G solvation = -14207.438645 eV Core-core repulsion = 11838.794553 eV Total energy + Delta-G solvation = -2368.644092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.51326 -38.92650 -35.44447 -34.37165 -32.37678 -30.87754 -29.12637 -26.76046 -24.87843 -22.54195 -21.46867 -20.29994 -18.96356 -18.28287 -16.80843 -16.12606 -15.99201 -15.28455 -14.97760 -14.67497 -14.62496 -14.05498 -13.70356 -13.27054 -12.74554 -12.49312 -12.41545 -12.22418 -11.96104 -11.64936 -11.61970 -10.78926 -10.59670 -10.37139 -10.08514 -9.21995 -8.23721 -6.30908 0.95763 1.44115 1.51825 1.74114 1.83542 1.90651 2.50413 3.13930 3.53530 3.82786 3.90298 4.14710 4.32781 4.43581 4.71785 4.73283 4.87195 4.99967 5.07066 5.30116 5.37344 5.51067 5.66309 5.74132 5.76343 6.25468 6.53256 6.73775 6.79445 7.24355 7.46821 8.91000 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042812 B = 0.014221 C = 0.012843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.864148 B = 1968.401128 C = 2179.658401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 H 0.079 0.921 4 C -0.027 4.027 5 C 0.062 3.938 6 N -0.454 5.454 7 H 0.448 0.552 8 N -0.315 5.315 9 C 0.063 3.937 10 C -0.272 4.272 11 C 0.286 3.714 12 O -0.577 6.577 13 C -0.526 4.526 14 H 0.029 0.971 15 C 0.038 3.962 16 N -0.943 5.943 17 Si 0.919 3.081 18 H -0.265 1.265 19 H -0.316 1.316 20 H -0.208 1.208 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.183 0.817 27 H 0.370 0.630 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -0.963 -12.186 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.066 4.066 5 C -0.068 4.068 6 N -0.164 5.164 7 H 0.294 0.706 8 N -0.138 5.138 9 C -0.122 4.122 10 C -0.284 4.284 11 C 0.245 3.755 12 O -0.384 6.384 13 C -0.564 4.564 14 H 0.047 0.953 15 C -0.161 4.161 16 N -0.583 5.583 17 Si 0.745 3.255 18 H -0.190 1.190 19 H -0.244 1.244 20 H -0.130 1.130 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.200 0.800 27 H 0.218 0.782 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.758 -1.686 -12.970 13.918 hybrid contribution -0.193 0.663 1.042 1.250 sum 4.565 -1.023 -11.928 12.813 Atomic orbital electron populations 1.21598 0.93707 1.01271 1.00819 1.22005 0.96407 0.98692 0.93446 0.90238 1.20881 1.03229 0.84595 0.97929 1.22127 0.99364 0.89281 0.96055 1.45577 1.59117 1.02957 1.08735 0.70565 1.77209 1.27130 1.17813 0.91644 1.23493 0.98806 0.91200 0.98662 1.21836 1.14599 0.96831 0.95091 1.17987 0.81825 0.84401 0.91284 1.86452 1.38695 1.59757 1.53471 1.21418 1.24383 0.94501 1.16092 0.95281 1.25665 0.93918 1.02734 0.93767 1.70105 1.40430 1.28702 1.19039 0.86455 0.82934 0.78385 0.77734 1.19004 1.24447 1.13020 0.94126 0.90799 0.94008 0.87413 0.87763 0.80027 0.78214 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 7.90 71.98 0.57 -3.93 15 2 C -0.09 -3.27 2.15 -9.81 -0.02 -3.29 15 3 H 0.08 3.00 5.73 -2.39 -0.01 2.98 15 4 C -0.03 -0.79 6.33 30.54 0.19 -0.60 15 5 C 0.06 2.09 8.07 41.52 0.34 2.42 15 6 N -0.45 -13.70 7.37 -47.46 -0.35 -14.05 15 7 H 0.45 9.53 8.96 -213.38 -1.91 7.62 15 8 N -0.31 -11.35 12.69 -56.87 -0.72 -12.08 15 9 C 0.06 2.48 12.03 85.33 1.03 3.51 15 10 C -0.27 -11.15 5.84 -19.90 -0.12 -11.27 15 11 C 0.29 12.66 0.66 -11.58 -0.01 12.66 15 12 O -0.58 -25.05 9.97 -148.98 -1.49 -26.53 15 13 C -0.53 -28.55 7.35 25.60 0.19 -28.36 15 14 H 0.03 1.80 8.01 -2.91 -0.02 1.77 15 15 C 0.04 2.12 4.66 84.65 0.39 2.52 15 16 N -0.94 -57.72 13.96 21.45 0.30 -57.42 15 17 Si 0.92 43.21 22.85 68.60 1.57 44.77 15 18 H -0.26 -11.62 6.91 99.48 0.69 -10.94 15 19 H -0.32 -15.41 7.11 99.48 0.71 -14.71 15 20 H -0.21 -9.23 5.24 99.48 0.52 -8.71 15 21 H 0.04 1.82 4.99 -2.38 -0.01 1.80 15 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.04 1.69 8.07 -2.39 -0.02 1.67 15 24 H 0.11 2.37 7.91 -2.39 -0.02 2.35 15 25 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.18 6.66 8.06 -2.91 -0.02 6.63 15 27 H 0.37 14.82 9.07 -74.06 -0.67 14.15 15 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 Total: -1.00 -68.03 226.50 0.28 -67.75 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -1.59 Total: 23.90 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 2.56 Total: -26.34 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -0.77 Total: -83.55 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.49 Total: -26.53 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.57 Total: 44.77 kcal Total: -68.03 0.28 -67.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898849.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.019 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds