Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.84485 * 2 1 4 4 C 1.54452 * 110.94191 * 123.69577 * 2 1 3 5 5 C 1.51320 * 104.99020 * 92.43286 * 4 2 1 6 6 N 1.35217 * 141.95032 * 196.92875 * 5 4 2 7 7 H 0.97003 * 126.02946 * 0.02562 * 6 5 4 8 8 N 1.40001 * 107.93946 * 180.02562 * 6 5 4 9 9 C 1.30741 * 108.20809 * 359.97438 * 8 6 5 10 10 C 1.35141 * 110.30232 * 16.95404 * 5 4 2 11 11 C 1.51360 * 110.24656 * 359.97438 * 10 5 4 12 12 O 1.42901 * 110.33170 * 224.08248 * 11 10 5 13 13 C 1.50694 * 110.33334 * 101.95097 * 11 10 5 14 14 H 1.08000 * 120.00563 * 241.45203 * 13 11 10 15 15 C 1.37885 * 119.99902 * 61.45367 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.09008 * 109.47368 * 183.70420 * 1 2 3 22 22 H 1.09001 * 109.46948 * 303.69263 * 1 2 3 23 23 H 1.08996 * 109.47530 * 63.70027 * 1 2 3 24 24 H 1.09001 * 110.31951 * 333.56409 * 4 2 1 25 25 H 1.09000 * 110.44789 * 211.36856 * 4 2 1 26 26 H 1.08009 * 125.87361 * 180.02562 * 9 8 6 27 27 H 0.96698 * 114.00243 * 297.14465 * 12 11 10 28 28 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9179 1.0186 0.0000 4 6 2.0821 -0.8003 1.2002 5 6 2.2799 -2.2058 0.6756 6 7 2.4598 -3.4809 1.0883 7 1 2.5022 -3.7818 2.0094 8 7 2.5739 -4.2900 -0.0485 9 6 2.4658 -3.5276 -1.1051 10 6 2.2799 -2.2063 -0.6758 11 6 2.0813 -0.8004 -1.2001 12 8 1.1398 -0.7997 -2.2750 13 6 3.3956 -0.2210 -1.6560 14 1 3.7892 0.6652 -1.1805 15 6 4.0958 -0.8223 -2.6804 16 7 3.6168 -1.9018 -3.2593 17 14 5.7246 -0.1038 -3.2460 18 1 5.4808 0.8854 -4.3265 19 1 6.3935 0.5671 -2.1025 20 1 6.5945 -1.1926 -3.7588 21 1 -0.3634 -1.0256 0.0664 22 1 -0.3633 0.5701 0.8551 23 1 -0.3634 0.4553 -0.9212 24 1 1.3625 -0.7993 2.0189 25 1 3.0326 -0.3823 1.5317 26 1 2.5119 -3.8589 -2.1321 27 1 1.4241 -1.3073 -3.0474 28 1 4.1092 -2.3245 -3.9802 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260898855.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = 29.973558 kcal Electronic energy + Delta-G solvation = -14192.846756 eV Core-core repulsion = 11824.623444 eV Total energy + Delta-G solvation = -2368.223312 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53522 -36.77849 -33.58179 -32.04839 -30.27858 -29.07996 -26.69423 -25.51630 -22.97150 -20.55189 -19.23544 -18.54928 -17.01979 -16.25926 -14.95688 -14.32995 -13.97981 -13.26360 -12.97978 -12.75958 -12.50261 -12.08736 -11.51931 -11.47388 -10.96551 -10.77998 -10.67307 -10.46619 -10.28899 -10.16088 -9.74230 -9.25555 -8.56500 -8.40469 -8.19033 -7.14228 -6.11907 -4.22398 2.86743 3.26055 3.33281 3.35630 3.62153 4.06766 4.36351 5.14564 5.38208 5.56533 5.77681 5.95780 6.13286 6.22307 6.30671 6.49426 6.54765 6.58514 6.86959 7.08044 7.08512 7.33382 7.60968 7.83176 7.88154 8.17122 8.27304 8.73049 8.80286 9.45277 9.59303 10.91832 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.015565 C = 0.012847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.026952 B = 1798.485015 C = 2179.048579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.080 0.920 4 C -0.025 4.025 5 C 0.007 3.993 6 N -0.482 5.482 7 H 0.421 0.579 8 N -0.327 5.327 9 C 0.098 3.902 10 C -0.185 4.185 11 C 0.318 3.682 12 O -0.586 6.586 13 C -0.531 4.531 14 H 0.061 0.939 15 C 0.075 3.925 16 N -0.887 5.887 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.275 1.275 20 H -0.286 1.286 21 H 0.047 0.953 22 H 0.035 0.965 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.181 0.819 27 H 0.379 0.621 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 0.996 5.748 6.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.098 0.902 4 C -0.065 4.065 5 C -0.120 4.120 6 N -0.191 5.191 7 H 0.262 0.738 8 N -0.150 5.150 9 C -0.087 4.087 10 C -0.196 4.196 11 C 0.278 3.722 12 O -0.394 6.394 13 C -0.569 4.569 14 H 0.079 0.921 15 C -0.128 4.128 16 N -0.527 5.527 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.200 1.200 20 H -0.212 1.212 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.198 0.802 27 H 0.229 0.771 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.744 0.056 6.399 6.963 hybrid contribution 1.505 0.427 -0.527 1.651 sum -1.238 0.483 5.873 6.021 Atomic orbital electron populations 1.21505 0.95254 1.00963 1.00506 1.21929 0.95141 0.98769 0.93481 0.90164 1.20635 1.00620 0.87431 0.97794 1.21634 1.05170 0.87968 0.97216 1.45460 1.62259 1.03687 1.07667 0.73821 1.77191 1.28130 1.18085 0.91582 1.23421 0.96498 0.91359 0.97446 1.21931 1.07811 0.97174 0.92685 1.17611 0.86649 0.84680 0.83298 1.86106 1.47615 1.76822 1.28833 1.21642 1.05313 1.11828 1.18096 0.92112 1.24955 0.97638 0.94226 0.95939 1.69652 1.39386 1.19258 1.24370 0.86534 0.83386 0.78752 0.78925 1.20489 1.20030 1.21210 0.93411 0.94586 0.91716 0.92180 0.90534 0.80240 0.77147 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.60 37.16 0.32 -1.97 15 2 C -0.07 -1.51 3.17 -89.11 -0.28 -1.79 15 3 H 0.08 1.59 7.73 -51.93 -0.40 1.19 15 4 C -0.03 -0.47 6.33 -26.82 -0.17 -0.64 15 5 C 0.01 0.14 8.07 -81.90 -0.66 -0.52 15 6 N -0.48 -9.57 7.36 33.65 0.25 -9.33 15 7 H 0.42 6.57 8.96 -182.67 -1.64 4.93 15 8 N -0.33 -7.36 12.69 30.67 0.39 -6.97 15 9 C 0.10 2.35 11.06 -17.29 -0.19 2.16 15 10 C -0.18 -4.46 5.15 -104.68 -0.54 -5.00 15 11 C 0.32 7.76 0.76 -91.85 -0.07 7.69 15 12 O -0.59 -14.79 11.56 -35.23 -0.41 -15.20 15 13 C -0.53 -14.01 8.25 -34.44 -0.28 -14.29 15 14 H 0.06 1.59 7.57 -52.49 -0.40 1.19 15 15 C 0.08 1.97 5.25 -17.82 -0.09 1.88 15 16 N -0.89 -23.15 9.55 55.43 0.53 -22.62 15 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 15 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 21 H 0.05 0.91 8.14 -51.92 -0.42 0.49 15 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.06 1.24 7.50 -51.93 -0.39 0.85 15 24 H 0.06 0.92 7.91 -51.93 -0.41 0.51 15 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 26 H 0.18 4.28 7.43 -52.48 -0.39 3.89 15 27 H 0.38 9.79 7.30 45.56 0.33 10.12 15 28 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 LS Contribution 235.80 15.07 3.55 3.55 Total: -1.00 -28.63 235.80 -6.38 -35.01 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -3.70 Total: 12.32 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.97 Total: -12.47 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 1.17 Total: -38.91 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.41 Total: -15.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.63 -6.38 -35.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898855.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.986 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds