Wall clock time and date at job start Mon Mar 30 2020 02:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39749 * 125.56340 * 2 1 4 4 H 0.97006 * 125.02070 * 359.97438 * 3 2 1 5 5 C 1.35508 * 109.96210 * 180.26458 * 3 2 1 6 6 C 1.50700 * 125.88725 * 179.77100 * 5 3 2 7 7 C 1.53003 * 117.49990 * 8.77339 * 6 5 3 8 8 C 1.53001 * 117.50064 * 300.11164 * 6 5 3 9 9 C 1.39162 * 108.22058 * 359.62992 * 5 3 2 10 10 C 1.40961 * 126.84149 * 180.11645 * 9 5 3 11 11 H 1.07997 * 120.00368 * 323.65294 * 10 9 5 12 12 C 1.39762 * 119.99941 * 143.64650 * 10 9 5 13 13 N 1.31071 * 119.99741 * 163.46619 * 12 10 9 14 14 Si 1.86794 * 120.00162 * 343.47209 * 12 10 9 15 15 H 1.48500 * 109.47155 * 95.72416 * 14 12 10 16 16 H 1.48492 * 109.47262 * 215.72413 * 14 12 10 17 17 H 1.48494 * 109.46907 * 335.72681 * 14 12 10 18 18 C 1.34865 * 125.55859 * 180.02562 * 2 1 3 19 19 O 1.21631 * 126.69126 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47514 * 89.99478 * 1 2 3 21 21 H 1.09001 * 109.47743 * 210.00355 * 1 2 3 22 22 H 1.09007 * 109.46932 * 330.00328 * 1 2 3 23 23 H 1.09000 * 115.54729 * 154.44073 * 6 5 3 24 24 H 1.09003 * 117.49909 * 0.02562 * 7 6 5 25 25 H 1.08995 * 117.50118 * 145.01894 * 7 6 5 26 26 H 1.09000 * 117.49688 * 214.97362 * 8 6 5 27 27 H 1.08999 * 117.49906 * 359.97438 * 8 6 5 28 28 H 0.96996 * 120.00080 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2778 1.1368 0.0000 4 1 1.9553 2.0517 -0.0004 5 6 3.5829 0.7724 -0.0059 6 6 4.7621 1.7108 -0.0127 7 6 4.4807 3.2004 0.1940 8 6 4.8853 2.6821 -1.1884 9 6 3.6466 -0.6178 -0.0013 10 6 4.8121 -1.4105 -0.0026 11 1 5.6804 -1.0933 -0.5610 12 6 4.8442 -2.6071 0.7189 13 7 5.7752 -3.4961 0.4724 14 14 3.5602 -2.9394 2.0342 15 1 2.4570 -3.7479 1.4560 16 1 4.1835 -3.6841 3.1575 17 1 3.0193 -1.6502 2.5347 18 6 2.2493 -1.0972 -0.0005 19 8 1.8785 -2.2556 -0.0006 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 5.6844 1.3097 0.4076 24 1 3.4427 3.5017 0.3352 25 1 5.2181 3.7795 0.7498 26 1 5.8887 2.9204 -1.5412 27 1 4.1137 2.6421 -1.9572 28 1 5.7978 -4.3264 0.9734 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:49 Heat of formation + Delta-G solvation = 41.109516 kcal Electronic energy + Delta-G solvation = -13739.839424 eV Core-core repulsion = 11372.099003 eV Total energy + Delta-G solvation = -2367.740421 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.89004 -38.55884 -37.23084 -35.27286 -33.49282 -31.26524 -28.27675 -26.77593 -23.54569 -23.14145 -21.60384 -20.53070 -19.60181 -18.03760 -17.04426 -16.58156 -16.43569 -16.09480 -15.68745 -14.82263 -14.74897 -14.15955 -13.62245 -13.43832 -13.13902 -12.83684 -12.67720 -12.30728 -12.27982 -11.90822 -11.43752 -11.22388 -10.98560 -10.33802 -9.58659 -8.68526 -8.51109 -5.98295 0.88365 1.03129 1.31815 1.44840 1.53473 2.24542 2.47661 3.01229 3.17445 3.36659 3.84954 4.06646 4.20448 4.31759 4.41893 4.53244 4.65205 4.75704 4.86307 5.11092 5.20779 5.32864 5.33636 5.48382 5.72260 6.27258 6.64896 6.83390 7.02049 7.26409 7.51149 8.56476 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.027676 B = 0.015698 C = 0.011117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.477333 B = 1783.245126 C = 2518.024735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.420 5.420 3 N -0.485 5.485 4 H 0.445 0.555 5 C 0.088 3.912 6 C -0.094 4.094 7 C -0.151 4.151 8 C -0.165 4.165 9 C -0.160 4.160 10 C -0.445 4.445 11 H 0.058 0.942 12 C 0.046 3.954 13 N -0.892 5.892 14 Si 0.968 3.032 15 H -0.278 1.278 16 H -0.295 1.295 17 H -0.280 1.280 18 C 0.473 3.527 19 O -0.596 6.596 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 16.278 0.425 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.240 5.240 3 N -0.215 5.215 4 H 0.293 0.707 5 C -0.024 4.024 6 C -0.114 4.114 7 C -0.188 4.188 8 C -0.202 4.202 9 C -0.172 4.172 10 C -0.480 4.480 11 H 0.076 0.924 12 C -0.161 4.161 13 N -0.526 5.526 14 Si 0.799 3.201 15 H -0.205 1.205 16 H -0.224 1.224 17 H -0.205 1.205 18 C 0.271 3.729 19 O -0.482 6.482 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.134 0.866 23 H 0.129 0.871 24 H 0.124 0.876 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.067 15.482 0.453 17.464 hybrid contribution -0.527 -0.534 0.350 0.828 sum -8.594 14.948 0.803 17.261 Atomic orbital electron populations 1.22074 0.73123 1.05223 1.04000 1.47943 1.04762 0.99597 1.71696 1.42592 0.99778 1.00176 1.78937 0.70747 1.20221 0.83221 0.92782 1.06200 1.20320 0.94945 0.89611 1.06559 1.23117 1.03671 0.93014 0.98973 1.23124 1.03867 1.01550 0.91664 1.19115 0.91381 0.92392 1.14283 1.18077 0.97789 1.03975 1.28133 0.92376 1.26231 0.96534 0.94842 0.98481 1.69837 1.35689 1.07711 1.39360 0.85391 0.79014 0.78386 0.77330 1.20491 1.22383 1.20547 1.19572 0.89023 0.83695 0.80577 1.90628 1.80652 1.18023 1.58888 0.90296 0.90454 0.86627 0.87096 0.87560 0.86274 0.87112 0.88806 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.49 11.35 127.77 1.45 3.94 15 2 N -0.42 -16.27 3.99 -487.39 -1.94 -18.21 15 3 N -0.48 -15.81 7.00 -45.49 -0.32 -16.13 15 4 H 0.44 9.61 7.88 -213.54 -1.68 7.92 15 5 C 0.09 3.57 6.84 42.21 0.29 3.86 15 6 C -0.09 -3.03 6.00 -11.54 -0.07 -3.10 15 7 C -0.15 -3.06 10.14 30.62 0.31 -2.75 15 8 C -0.16 -3.92 10.24 30.62 0.31 -3.60 15 9 C -0.16 -8.57 5.11 -19.88 -0.10 -8.67 15 10 C -0.44 -27.34 9.60 23.31 0.22 -27.12 15 11 H 0.06 3.71 8.06 -2.91 -0.02 3.69 15 12 C 0.05 2.91 5.46 85.17 0.47 3.38 15 13 N -0.89 -57.31 13.94 21.81 0.30 -57.00 15 14 Si 0.97 54.78 24.33 68.60 1.67 56.45 15 15 H -0.28 -16.74 6.20 99.48 0.62 -16.12 15 16 H -0.30 -15.58 7.11 99.48 0.71 -14.87 15 17 H -0.28 -15.57 6.97 99.48 0.69 -14.88 15 18 C 0.47 24.95 6.64 86.74 0.58 25.53 15 19 O -0.60 -35.72 13.59 -4.13 -0.06 -35.77 15 20 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.08 2.22 8.08 -2.39 -0.02 2.20 15 22 H 0.12 1.93 8.14 -2.38 -0.02 1.91 15 23 H 0.11 4.02 8.13 -2.39 -0.02 4.00 15 24 H 0.11 1.70 7.11 -2.39 -0.02 1.68 15 25 H 0.12 1.95 8.14 -2.39 -0.02 1.94 15 26 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.28 16.47 8.30 -92.71 -0.77 15.70 15 Total: -1.00 -82.30 242.76 2.50 -79.79 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -0.61 Total: -0.61 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 3.46 Total: -8.53 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -1.96 Total: -91.34 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.06 Total: -35.77 kcal Atomic # 14 Polarization: 54.78 SS G_CDS: 1.67 Total: 56.45 kcal Total: -82.30 2.50 -79.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.904 kcal (2) G-P(sol) polarization free energy of solvation -82.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds