Wall clock time and date at job start Mon Mar 30 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50701 * 109.47268 * 120.00359 * 2 1 3 5 5 H 1.08001 * 120.00224 * 120.00114 * 4 2 1 6 6 C 1.37885 * 119.99830 * 300.00007 * 4 2 1 7 7 N 1.31515 * 119.99728 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47284 * 90.00172 * 8 6 4 10 10 H 1.48497 * 109.47110 * 209.99758 * 8 6 4 11 11 H 1.48500 * 109.47526 * 329.99951 * 8 6 4 12 12 C 1.52998 * 109.46937 * 240.00318 * 2 1 3 13 13 C 1.50698 * 109.47454 * 65.00223 * 12 2 1 14 14 C 1.38263 * 119.99064 * 89.99547 * 13 12 2 15 15 C 1.38226 * 120.05409 * 180.02562 * 14 13 12 16 16 C 1.38218 * 120.02243 * 0.02562 * 15 14 13 17 17 C 1.38445 * 119.97632 * 359.97438 * 16 15 14 18 18 F 1.35093 * 120.02545 * 179.72769 * 17 16 15 19 19 C 1.38176 * 119.98113 * 270.02036 * 13 12 2 20 20 H 1.09002 * 109.46741 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46943 * 299.99493 * 1 2 3 22 22 H 1.08995 * 109.47357 * 60.00172 * 1 2 3 23 23 H 0.97000 * 119.99287 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.47414 * 304.99366 * 12 2 1 25 25 H 1.09003 * 109.46963 * 184.99876 * 12 2 1 26 26 H 1.08006 * 119.97611 * 0.04291 * 14 13 12 27 27 H 1.07992 * 119.98872 * 179.97438 * 15 14 13 28 28 H 1.08007 * 120.01313 * 180.02562 * 16 15 14 29 29 H 1.08000 * 120.01900 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5655 3.7121 12 6 2.0399 -0.7212 -1.2493 13 6 1.6413 0.0572 -2.4766 14 6 2.4817 1.0333 -2.9791 15 6 2.1172 1.7484 -4.1045 16 6 0.9115 1.4886 -4.7284 17 6 0.0692 0.5114 -4.2262 18 9 -1.1119 0.2604 -4.8320 19 6 0.4358 -0.2047 -3.0990 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 0.7096 1.1616 3.4845 24 1 1.6054 -1.7197 -1.2952 25 1 3.1263 -0.7994 -1.2056 26 1 3.4240 1.2371 -2.4921 27 1 2.7742 2.5108 -4.4958 28 1 0.6270 2.0471 -5.6080 29 1 -0.2210 -0.9667 -2.7058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:36 Heat of formation + Delta-G solvation = -56.548220 kcal Electronic energy + Delta-G solvation = -13106.894362 eV Core-core repulsion = 10714.999223 eV Total energy + Delta-G solvation = -2391.895140 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.85701 -40.16082 -36.78058 -33.98188 -31.50302 -31.21099 -27.51706 -26.95358 -23.56269 -23.04844 -21.13435 -18.43171 -17.92060 -17.22340 -17.03085 -16.65614 -16.49135 -15.27136 -14.91564 -14.64148 -14.28491 -13.91674 -13.60474 -13.07174 -12.92233 -12.75134 -12.66661 -12.39498 -12.14304 -11.94968 -11.56660 -11.33031 -10.81436 -10.43093 -9.76322 -9.49678 -8.07520 -6.22213 0.27628 0.36543 1.42809 1.43860 1.53830 2.44288 2.72901 3.20296 3.32850 3.87111 3.96333 4.22095 4.39245 4.48025 4.62096 4.78918 4.87233 5.02411 5.12334 5.19989 5.22748 5.29590 5.39516 5.46727 5.61412 5.71433 5.98344 6.04564 6.14189 6.37609 6.90238 7.46591 8.97141 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.057204 B = 0.007304 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.361846 B = 3832.474842 C = 4012.931446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.049 3.951 3 H -0.002 1.002 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.267 1.267 12 C -0.067 4.067 13 C -0.047 4.047 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.165 4.165 17 C 0.078 3.922 18 F -0.150 7.150 19 C -0.164 4.164 20 H 0.025 0.975 21 H 0.050 0.950 22 H 0.026 0.974 23 H 0.260 0.740 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.136 0.864 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 0.662 -12.168 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.031 3.969 3 H 0.016 0.984 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.105 4.105 13 C -0.047 4.047 14 C -0.157 4.157 15 C -0.101 4.101 16 C -0.183 4.183 17 C 0.059 3.941 18 F -0.129 7.129 19 C -0.183 4.183 20 H 0.044 0.956 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.154 0.846 27 H 0.183 0.817 28 H 0.175 0.825 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.691 0.754 -12.059 12.200 hybrid contribution -0.256 -0.442 1.066 1.182 sum 1.435 0.312 -10.993 11.090 Atomic orbital electron populations 1.21688 0.98763 0.98559 0.99417 1.18558 0.92738 0.94365 0.91283 0.98365 1.21594 1.31132 1.12565 0.91802 0.92468 1.25765 0.95280 0.95707 1.02021 1.70043 1.37763 1.24276 1.23840 0.85603 0.78037 0.79227 0.79072 1.20066 1.21199 1.19136 1.20688 1.00681 0.97791 0.91308 1.20029 0.93307 0.96216 0.95115 1.21410 1.00798 0.96230 0.97309 1.21330 0.95713 0.98832 0.94194 1.21366 0.95257 0.98703 1.03004 1.17909 0.82938 0.99107 0.94149 1.91444 1.45113 1.93729 1.82582 1.21098 0.98391 1.02682 0.96149 0.95589 0.93130 0.95509 0.93117 0.92029 0.91298 0.84622 0.81702 0.82460 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.54 71.98 0.61 -5.64 15 2 C 0.05 2.45 2.29 -11.54 -0.03 2.42 15 3 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 4 C -0.53 -29.06 8.56 25.60 0.22 -28.84 15 5 H 0.06 3.02 7.74 -2.91 -0.02 3.00 15 6 C 0.01 0.59 5.30 84.66 0.45 1.03 15 7 N -0.92 -53.60 11.32 21.45 0.24 -53.36 15 8 Si 0.95 43.39 29.54 68.60 2.03 45.41 15 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 15 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 12 C -0.07 -2.71 4.78 29.85 0.14 -2.57 15 13 C -0.05 -1.64 4.71 -19.87 -0.09 -1.73 15 14 C -0.14 -4.19 9.70 22.27 0.22 -3.97 15 15 C -0.08 -2.00 10.04 22.26 0.22 -1.78 15 16 C -0.16 -4.15 10.03 22.31 0.22 -3.93 15 17 C 0.08 2.40 7.30 22.38 0.16 2.57 15 18 F -0.15 -4.64 17.27 44.97 0.78 -3.87 15 19 C -0.16 -5.61 7.94 22.31 0.18 -5.44 15 20 H 0.02 1.21 8.14 -2.39 -0.02 1.19 15 21 H 0.05 2.80 6.07 -2.39 -0.01 2.78 15 22 H 0.03 1.19 6.26 -2.39 -0.01 1.18 15 23 H 0.26 14.42 8.31 -92.71 -0.77 13.65 15 24 H 0.06 2.43 8.08 -2.39 -0.02 2.41 15 25 H 0.07 2.64 8.09 -2.39 -0.02 2.62 15 26 H 0.14 3.76 8.06 -2.91 -0.02 3.74 15 27 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 28 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 29 H 0.13 4.31 8.04 -2.91 -0.02 4.29 15 Total: -1.00 -60.42 251.69 6.48 -53.94 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.13 Total: 5.75 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 2.31 Total: -47.87 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.24 Total: -53.36 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -60.42 6.48 -53.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.607 kcal (2) G-P(sol) polarization free energy of solvation -60.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds