Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46948 * 110.99999 * 2 1 4 4 C 1.53741 * 109.58621 * 164.51249 * 3 2 1 5 5 C 1.49924 * 107.71747 * 48.15442 * 4 3 2 6 6 C 1.45784 * 131.54809 * 164.71546 * 5 4 3 7 7 C 1.41735 * 127.71511 * 0.09991 * 6 5 4 8 8 H 1.08002 * 120.00263 * 359.97438 * 7 6 5 9 9 C 1.39988 * 119.99658 * 179.97438 * 7 6 5 10 10 N 1.30752 * 120.00215 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00027 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47056 * 59.99909 * 11 9 7 13 13 H 1.48494 * 109.47192 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46914 * 300.00058 * 11 9 7 15 15 N 1.32820 * 104.56609 * 180.02562 * 6 5 4 16 16 O 1.21655 * 111.41383 * 0.14849 * 15 6 5 17 17 C 1.33130 * 112.89787 * 359.73171 * 16 15 6 18 18 C 1.47344 * 110.99898 * 235.01601 * 2 1 3 19 19 H 1.09003 * 109.46738 * 60.00194 * 1 2 3 20 20 H 1.08996 * 109.47146 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47212 * 300.00307 * 1 2 3 22 22 H 1.08992 * 109.45591 * 44.47377 * 3 2 1 23 23 H 1.09000 * 109.43042 * 284.53124 * 3 2 1 24 24 H 1.09002 * 109.82043 * 167.72997 * 4 3 2 25 25 H 1.08998 * 109.81796 * 288.58567 * 4 3 2 26 26 H 0.96999 * 120.00342 * 180.02562 * 10 9 7 27 27 H 1.08994 * 109.71324 * 295.76280 * 18 2 1 28 28 H 1.09002 * 109.71116 * 56.40034 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.4835 1.3528 0.3868 5 6 4.1559 0.2970 -0.4384 6 6 5.5636 0.0341 -0.7117 7 6 6.6883 0.7523 -0.2343 8 1 6.5492 1.6060 0.4125 9 6 7.9796 0.3551 -0.6012 10 7 8.1480 -0.6787 -1.3838 11 14 9.4620 1.3021 0.0274 12 1 9.4823 1.2615 1.5117 13 1 10.7046 0.6842 -0.5012 14 1 9.3776 2.7129 -0.4281 15 7 5.5564 -1.0299 -1.5066 16 8 4.4225 -1.4087 -1.7316 17 6 3.4986 -0.6678 -1.1233 18 6 1.9970 -0.7887 -1.1270 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.4411 1.9736 0.7200 23 1 1.8848 1.8028 -0.9950 24 1 3.9316 2.3247 0.1801 25 1 3.5870 1.1159 1.4457 26 1 9.0427 -0.9541 -1.6377 27 1 1.7124 -1.8342 -1.0094 28 1 1.5986 -0.4019 -2.0650 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = 54.438493 kcal Electronic energy + Delta-G solvation = -13595.350535 eV Core-core repulsion = 11228.188102 eV Total energy + Delta-G solvation = -2367.162433 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.38041 -37.84064 -33.93667 -32.43164 -30.49508 -29.81994 -26.44707 -25.97889 -23.64740 -21.92305 -20.48164 -18.63489 -16.74955 -15.78050 -15.54640 -15.13211 -14.72968 -14.38489 -13.91729 -13.04861 -12.82494 -12.56359 -12.27296 -11.83482 -11.51246 -11.23800 -11.18282 -10.78739 -10.67032 -10.40793 -9.96333 -9.52400 -8.88011 -8.17583 -8.02082 -7.51339 -6.48551 -4.41972 3.08272 3.09484 3.16069 3.18627 3.95579 4.07206 4.11058 4.63680 5.22892 5.40608 5.44980 5.49559 5.59306 5.73645 5.81302 5.87721 5.90810 6.21522 6.36056 6.50726 6.62414 6.83862 7.07887 7.23220 7.32201 7.46542 7.51100 8.39353 8.72251 8.99986 10.47392 10.63838 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.059045 B = 0.009074 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.101740 B = 3084.907425 C = 3508.818240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.543 5.543 3 C 0.059 3.941 4 C -0.022 4.022 5 C -0.251 4.251 6 C 0.179 3.821 7 C -0.444 4.444 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.775 5.775 11 Si 0.913 3.087 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.267 1.267 15 N -0.409 5.409 16 O 0.036 5.964 17 C -0.081 4.081 18 C 0.154 3.846 19 H 0.023 0.977 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.275 0.725 27 H 0.088 0.912 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 3.388 2.229 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.060 4.060 5 C -0.256 4.256 6 C 0.033 3.967 7 C -0.482 4.482 8 H 0.101 0.899 9 C -0.150 4.150 10 N -0.403 5.403 11 Si 0.738 3.262 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.192 1.192 15 N -0.139 5.139 16 O -0.008 6.008 17 C -0.145 4.145 18 C 0.025 3.975 19 H 0.042 0.958 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.230 2.239 1.905 9.687 hybrid contribution 0.136 1.346 -0.001 1.352 sum -9.094 3.584 1.905 9.959 Atomic orbital electron populations 1.22322 0.87074 1.02004 1.00462 1.61725 1.07053 1.14239 1.43837 1.22232 0.96667 0.88234 0.99743 1.19638 0.91395 0.96598 0.98405 1.21553 0.93871 1.02270 1.07922 1.21044 0.90793 0.91716 0.93163 1.18571 0.88272 1.12869 1.28496 0.89879 1.25846 1.00341 0.94753 0.94031 1.69863 1.23848 1.20770 1.25813 0.86300 0.79888 0.80182 0.79826 1.19110 1.20487 1.19153 1.75393 0.93248 1.18874 1.26347 1.84591 1.11073 1.47760 1.57392 1.23225 0.93089 0.96593 1.01633 1.20158 0.87069 0.98720 0.91523 0.95839 0.91363 0.91289 0.90871 0.94809 0.91248 0.91375 0.91386 0.89379 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.55 60.07 0.57 0.92 15 2 N -0.54 -8.68 4.85 -243.50 -1.18 -9.86 15 3 C 0.06 0.94 5.56 -3.41 -0.02 0.92 15 4 C -0.02 -0.44 6.51 -27.87 -0.18 -0.62 15 5 C -0.25 -6.19 6.35 -103.01 -0.65 -6.85 15 6 C 0.18 5.22 6.98 -83.09 -0.58 4.64 15 7 C -0.44 -12.66 9.48 -37.59 -0.36 -13.02 15 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 15 9 C 0.07 1.93 5.50 -17.36 -0.10 1.83 15 10 N -0.77 -22.63 12.06 55.55 0.67 -21.96 15 11 Si 0.91 20.00 29.56 -169.99 -5.02 14.97 15 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 15 N -0.41 -12.36 10.57 33.17 0.35 -12.01 15 16 O 0.04 0.98 11.10 19.27 0.21 1.19 15 17 C -0.08 -1.88 7.48 -35.36 -0.26 -2.15 15 18 C 0.15 2.68 5.86 -4.76 -0.03 2.65 15 19 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 15 20 H 0.07 0.70 8.13 -51.93 -0.42 0.28 15 21 H 0.07 0.70 8.09 -51.93 -0.42 0.28 15 22 H 0.07 0.95 7.96 -51.93 -0.41 0.54 15 23 H 0.03 0.53 8.08 -51.93 -0.42 0.12 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.28 7.34 8.29 -40.82 -0.34 7.00 15 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 LS Contribution 241.83 15.07 3.64 3.64 Total: -1.00 -32.71 241.83 -6.27 -38.98 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -3.34 Total: -3.28 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.61 Total: -11.68 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.16 Total: -43.83 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.21 Total: 1.19 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.71 -6.27 -38.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.419 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds