Wall clock time and date at job start Mon Mar 30 2020 02:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40319 * 126.16071 * 2 1 4 4 C 1.30348 * 109.06197 * 180.15261 * 3 2 1 5 5 C 1.39613 * 108.97458 * 359.72339 * 4 3 2 6 6 C 1.37791 * 126.16051 * 179.80358 * 2 1 3 7 7 C 1.40239 * 126.74547 * 359.91082 * 6 2 1 8 8 H 1.08002 * 119.99433 * 124.21307 * 7 6 2 9 9 C 1.40158 * 120.00397 * 304.20866 * 7 6 2 10 10 N 1.30767 * 120.00148 * 184.22534 * 9 7 6 11 11 Si 1.86799 * 120.00151 * 4.22933 * 9 7 6 12 12 H 1.48498 * 109.47465 * 96.09043 * 11 9 7 13 13 H 1.48503 * 109.47132 * 216.09594 * 11 9 7 14 14 H 1.48498 * 109.46751 * 336.09128 * 11 9 7 15 15 C 1.50783 * 122.93985 * 180.02562 * 5 4 3 16 16 O 1.43468 * 107.76753 * 344.94399 * 15 5 4 17 17 C 1.42932 * 114.51317 * 51.12073 * 16 15 5 18 18 C 1.51178 * 128.92999 * 179.97438 * 4 3 2 19 19 H 1.09006 * 109.47165 * 266.34299 * 1 2 3 20 20 H 1.08999 * 109.46838 * 26.34282 * 1 2 3 21 21 H 1.09002 * 109.47216 * 146.34289 * 1 2 3 22 22 H 0.96999 * 120.00154 * 180.02562 * 10 9 7 23 23 H 1.09000 * 109.80828 * 225.37550 * 15 5 4 24 24 H 1.09002 * 109.85203 * 104.53362 * 15 5 4 25 25 H 1.09000 * 109.39874 * 167.81806 * 17 16 15 26 26 H 1.08992 * 109.39703 * 48.08475 * 17 16 15 27 27 H 1.09002 * 109.83639 * 283.21670 * 18 4 3 28 28 H 1.09000 * 109.83264 * 44.17249 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2930 1.1329 0.0000 4 6 3.5389 0.7496 -0.0033 5 6 3.5846 -0.6457 0.0008 6 6 2.2781 -1.1125 0.0038 7 6 1.8659 -2.4529 0.0102 8 1 2.2089 -3.1269 -0.7609 9 6 1.0089 -2.9179 1.0170 10 7 0.6905 -4.1850 1.0711 11 14 0.3214 -1.7274 2.2818 12 1 -1.0312 -1.2830 1.8594 13 1 0.2308 -2.4041 3.6006 14 1 1.2180 -0.5488 2.3908 15 6 4.8762 -1.4238 -0.0009 16 8 5.9309 -0.5206 -0.3618 17 6 5.9636 0.6879 0.4007 18 6 4.7926 1.5944 -0.0052 19 1 -0.3634 -0.0656 1.0256 20 1 -0.3633 0.9210 -0.4560 21 1 -0.3634 -0.8554 -0.5696 22 1 0.0971 -4.5067 1.7677 23 1 4.8186 -2.2336 -0.7281 24 1 5.0636 -1.8322 0.9922 25 1 6.9042 1.2070 0.2162 26 1 5.8854 0.4490 1.4612 27 1 4.9661 1.9966 -1.0033 28 1 4.6900 2.4101 0.7105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098585.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:53 Heat of formation + Delta-G solvation = 9.479726 kcal Electronic energy + Delta-G solvation = -13914.010429 eV Core-core repulsion = 11544.898438 eV Total energy + Delta-G solvation = -2369.111991 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75688 -38.88009 -35.62521 -34.21814 -32.62257 -31.39432 -29.06570 -26.99752 -24.90726 -23.99247 -21.46369 -19.91761 -19.22145 -17.50898 -17.25627 -16.35403 -16.15610 -16.09121 -15.60358 -15.23592 -14.49852 -14.27782 -13.95211 -13.47615 -13.21778 -13.08479 -12.72222 -12.35340 -12.15158 -11.92625 -11.68361 -11.43755 -11.00688 -10.48111 -9.69462 -8.96822 -8.72532 -6.74784 1.02318 1.16078 1.27881 1.32950 1.84088 2.01118 2.04640 2.80960 3.05966 3.65189 4.08503 4.16417 4.21972 4.44943 4.51556 4.53780 4.66727 4.73579 4.86633 4.89054 5.04703 5.10198 5.38722 5.42771 5.80785 6.12309 6.23027 6.40318 6.69514 6.79665 7.18618 8.29909 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.039144 B = 0.013503 C = 0.011370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.137738 B = 2073.163324 C = 2462.135743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.420 5.420 3 N -0.364 5.364 4 C 0.072 3.928 5 C -0.383 4.383 6 C 0.250 3.750 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.068 3.932 10 N -0.864 5.864 11 Si 0.935 3.065 12 H -0.227 1.227 13 H -0.279 1.279 14 H -0.278 1.278 15 C 0.172 3.828 16 O -0.397 6.397 17 C 0.066 3.934 18 C -0.062 4.062 19 H 0.059 0.941 20 H 0.103 0.897 21 H 0.089 0.911 22 H 0.291 0.709 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.134 0.866 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 7.831 1.543 8.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.207 5.207 3 N -0.185 5.185 4 C -0.094 4.094 5 C -0.395 4.395 6 C 0.129 3.871 7 C -0.534 4.534 8 H 0.092 0.908 9 C -0.145 4.145 10 N -0.494 5.494 11 Si 0.760 3.240 12 H -0.152 1.152 13 H -0.206 1.206 14 H -0.204 1.204 15 C 0.095 3.905 16 O -0.316 6.316 17 C -0.011 4.011 18 C -0.102 4.102 19 H 0.077 0.923 20 H 0.122 0.878 21 H 0.108 0.892 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.152 0.848 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.499 8.609 1.470 9.084 hybrid contribution -0.462 -0.707 0.651 1.066 sum 2.037 7.902 2.121 8.431 Atomic orbital electron populations 1.22170 0.75527 1.05155 1.02600 1.49799 1.05833 1.03546 1.61506 1.76452 1.01607 1.09667 1.30802 1.22322 0.93911 0.94258 0.98864 1.21143 0.95498 0.94568 1.28314 1.18455 0.88987 0.87926 0.91769 1.18221 1.30592 0.91377 1.13244 0.90848 1.26258 0.93401 0.96528 0.98359 1.69561 1.30942 1.15562 1.33340 0.86258 0.80734 0.78534 0.78457 1.15189 1.20585 1.20384 1.20421 0.81416 0.89713 0.98956 1.87862 1.50777 1.30705 1.62287 1.22750 0.98627 0.84747 0.94983 1.20889 0.88282 0.97005 1.03985 0.92262 0.87830 0.89241 0.89818 0.89995 0.93547 0.84799 0.93146 0.88852 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.44 9.19 127.77 1.17 4.61 15 2 N -0.42 -20.40 3.19 -361.39 -1.15 -21.55 15 3 N -0.36 -17.34 12.51 -47.39 -0.59 -17.93 15 4 C 0.07 3.22 7.18 43.26 0.31 3.53 15 5 C -0.38 -18.60 6.09 -19.39 -0.12 -18.71 15 6 C 0.25 13.04 5.17 38.81 0.20 13.24 15 7 C -0.50 -27.28 9.41 23.22 0.22 -27.06 15 8 H 0.07 4.36 8.06 -2.91 -0.02 4.34 15 9 C 0.07 3.56 5.50 85.32 0.47 4.02 15 10 N -0.86 -46.43 13.93 21.87 0.30 -46.13 15 11 Si 0.93 41.31 23.22 68.60 1.59 42.90 15 12 H -0.23 -8.69 6.10 99.48 0.61 -8.08 15 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 14 H -0.28 -13.54 6.46 99.48 0.64 -12.89 15 15 C 0.17 7.32 7.12 71.26 0.51 7.83 15 16 O -0.40 -14.79 10.73 -148.98 -1.60 -16.38 15 17 C 0.07 1.92 6.75 72.17 0.49 2.41 15 18 C -0.06 -2.00 6.58 30.18 0.20 -1.80 15 19 H 0.06 2.30 3.66 -2.38 -0.01 2.29 15 20 H 0.10 3.47 8.14 -2.39 -0.02 3.45 15 21 H 0.09 3.50 7.92 -2.39 -0.02 3.48 15 22 H 0.29 14.17 8.29 -92.71 -0.77 13.40 15 23 H 0.08 3.53 8.14 -2.39 -0.02 3.51 15 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.13 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.05 1.46 8.08 -2.39 -0.02 1.44 15 27 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 28 H 0.10 2.76 8.14 -2.39 -0.02 2.74 15 Total: -1.00 -64.28 231.07 3.00 -61.28 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.00 Total: 9.75 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 3.45 Total: -11.93 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -1.44 Total: -85.61 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.60 Total: -16.38 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.59 Total: 42.90 kcal Total: -64.28 3.00 -61.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098585.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.759 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds