Wall clock time and date at job start Mon Mar 30 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32470 * 120.62739 * 2 1 4 4 C 1.32025 * 119.52364 * 180.24476 * 3 2 1 5 5 N 1.32005 * 120.87098 * 359.45012 * 4 3 2 6 6 N 1.28737 * 121.35234 * 0.27369 * 5 4 3 7 7 C 1.32221 * 120.38866 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.44049 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47771 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46932 * 299.99846 * 8 7 6 11 11 H 1.08001 * 120.00059 * 5.44604 * 10 8 7 12 12 C 1.37883 * 120.00223 * 185.44522 * 10 8 7 13 13 N 1.31514 * 119.99529 * 9.41723 * 12 10 8 14 14 Si 1.86797 * 119.99973 * 189.41659 * 12 10 8 15 15 H 1.48492 * 109.47394 * 84.99739 * 14 12 10 16 16 H 1.48499 * 109.46899 * 204.99519 * 14 12 10 17 17 H 1.48503 * 109.47043 * 324.99117 * 14 12 10 18 18 C 1.53000 * 109.47537 * 59.99762 * 8 7 6 19 19 N 1.46902 * 109.47074 * 63.60841 * 18 8 7 20 20 H 1.09000 * 109.47680 * 270.30304 * 1 2 3 21 21 H 1.09002 * 109.47565 * 30.30165 * 1 2 3 22 22 H 1.09001 * 109.47384 * 150.30275 * 1 2 3 23 23 H 1.08006 * 119.55949 * 179.72443 * 4 3 2 24 24 H 0.97002 * 119.99386 * 179.97438 * 13 12 10 25 25 H 1.09001 * 109.47131 * 183.61192 * 18 8 7 26 26 H 1.09004 * 109.46992 * 303.61336 * 18 8 7 27 27 H 1.00899 * 111.00022 * 179.97438 * 19 18 8 28 28 H 1.00899 * 110.99902 * 303.95791 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1818 1.1399 0.0000 4 6 3.5018 1.1145 -0.0049 5 7 4.1572 -0.0314 0.0011 6 7 3.5355 -1.1586 0.0066 7 6 2.2137 -1.1935 0.0059 8 6 1.4847 -2.5124 0.0129 9 1 0.4095 -2.3333 0.0116 10 6 1.8643 -3.3026 -1.2129 11 1 2.6282 -2.9311 -1.8798 12 6 1.2364 -4.5001 -1.4830 13 7 0.1848 -4.8638 -0.7820 14 14 1.8794 -5.6056 -2.8445 15 1 2.9709 -6.4610 -2.3136 16 1 0.7771 -6.4647 -3.3466 17 1 2.4011 -4.7700 -3.9557 18 6 1.8684 -3.3006 1.2669 19 7 1.4209 -2.5702 2.4603 20 1 -0.3634 0.0054 1.0276 21 1 -0.3634 0.8873 -0.5185 22 1 -0.3634 -0.8927 -0.5091 23 1 4.0526 2.0435 -0.0094 24 1 -0.2572 -5.7061 -0.9722 25 1 1.3914 -4.2803 1.2403 26 1 2.9508 -3.4243 1.3012 27 1 1.6623 -3.0709 3.3024 28 1 1.7987 -1.6347 2.4745 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:19 Heat of formation + Delta-G solvation = 61.925096 kcal Electronic energy + Delta-G solvation = -13684.400504 eV Core-core repulsion = 11349.855466 eV Total energy + Delta-G solvation = -2334.545038 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.27601 -35.92921 -34.76710 -32.48686 -32.34725 -28.92912 -28.24312 -24.75831 -23.70001 -22.96712 -20.36833 -18.21100 -16.51767 -16.21330 -15.30243 -15.08438 -14.58963 -14.01315 -13.57778 -12.97602 -12.80393 -12.34012 -12.14237 -11.85451 -11.29036 -11.14197 -10.98954 -10.76863 -10.52400 -10.45087 -9.84633 -9.59010 -8.87497 -8.69033 -8.51200 -7.84076 -6.19175 -4.22661 1.08822 1.37476 3.26072 3.32469 3.36482 4.05204 4.19966 4.34678 4.40712 4.74872 5.09364 5.25596 5.50440 5.62912 5.88940 5.93422 6.10231 6.30276 6.47749 6.64838 6.75141 7.30054 7.46949 7.51437 7.72794 7.90919 8.09030 8.18441 8.79145 9.09709 9.41124 10.88666 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033922 B = 0.011346 C = 0.010447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.226342 B = 2467.263939 C = 2679.487221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.146 3.854 3 N -0.484 5.484 4 C 0.196 3.804 5 N -0.297 5.297 6 N -0.191 5.191 7 C 0.070 3.930 8 C 0.096 3.904 9 H 0.074 0.926 10 C -0.514 4.514 11 H 0.059 0.941 12 C 0.069 3.931 13 N -0.880 5.880 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.074 3.926 19 N -0.851 5.851 20 H 0.089 0.911 21 H 0.075 0.925 22 H 0.101 0.899 23 H 0.197 0.803 24 H 0.265 0.735 25 H 0.095 0.905 26 H 0.015 0.985 27 H 0.326 0.674 28 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 6.806 2.863 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.011 4.011 3 N -0.205 5.205 4 C -0.095 4.095 5 N -0.142 5.142 6 N -0.039 5.039 7 C -0.078 4.078 8 C 0.075 3.925 9 H 0.092 0.908 10 C -0.553 4.553 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.517 5.517 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.056 4.056 19 N -0.378 5.378 20 H 0.108 0.892 21 H 0.094 0.906 22 H 0.120 0.880 23 H 0.213 0.787 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.033 0.967 27 H 0.137 0.863 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.855 6.621 2.579 7.157 hybrid contribution 0.682 -0.433 -0.523 0.962 sum 1.537 6.188 2.057 6.699 Atomic orbital electron populations 1.20873 0.86780 1.04621 1.04065 1.22589 0.99187 0.88971 0.90332 1.68789 1.09269 1.30511 1.11973 1.26057 0.88981 0.99004 0.95448 1.73605 1.33516 0.96181 1.10889 1.73730 1.08027 1.16612 1.05545 1.24473 0.92758 0.99755 0.90821 1.18053 0.95849 0.84113 0.94443 0.90844 1.20863 1.21684 1.05365 1.07370 0.92258 1.24928 0.94201 0.97745 0.96543 1.69960 1.18274 1.22713 1.40722 0.86548 0.78659 0.80608 0.81938 1.20280 1.21117 1.19933 1.22014 0.96343 0.99350 0.87915 1.59003 1.67754 1.05594 1.05449 0.89230 0.90569 0.88003 0.78662 0.92514 0.88718 0.96686 0.86324 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.63 36.00 0.35 -1.33 15 2 C 0.15 2.77 6.82 -82.15 -0.56 2.20 15 3 N -0.48 -8.63 10.48 -10.65 -0.11 -8.74 15 4 C 0.20 3.32 12.39 -91.77 -1.14 2.18 15 5 N -0.30 -5.93 11.57 29.30 0.34 -5.59 15 6 N -0.19 -4.26 11.19 33.66 0.38 -3.88 15 7 C 0.07 1.50 4.44 -82.25 -0.37 1.14 15 8 C 0.10 2.26 1.94 -92.92 -0.18 2.08 15 9 H 0.07 1.78 5.55 -51.93 -0.29 1.49 15 10 C -0.51 -13.55 8.37 -34.44 -0.29 -13.83 15 11 H 0.06 1.63 7.76 -52.49 -0.41 1.23 15 12 C 0.07 1.82 5.17 -17.82 -0.09 1.73 15 13 N -0.88 -23.53 12.15 55.43 0.67 -22.86 15 14 Si 0.90 20.70 29.55 -169.99 -5.02 15.68 15 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 16 H -0.29 -6.50 7.11 56.52 0.40 -6.09 15 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 18 C 0.07 1.67 6.08 -3.82 -0.02 1.65 15 19 N -0.85 -16.11 9.62 -10.37 -0.10 -16.21 15 20 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.10 1.75 6.20 -51.93 -0.32 1.43 15 23 H 0.20 2.40 8.06 -52.48 -0.42 1.97 15 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 25 H 0.09 2.35 6.82 -51.93 -0.35 2.00 15 26 H 0.01 0.35 7.98 -51.93 -0.41 -0.07 15 27 H 0.33 5.41 9.08 -39.29 -0.36 5.05 15 28 H 0.31 5.80 8.01 -39.29 -0.31 5.49 15 LS Contribution 244.79 15.07 3.69 3.69 Total: -1.00 -28.33 244.79 -5.32 -33.65 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.86 Total: 8.44 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.30 Total: -4.18 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 1.18 Total: -57.28 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.33 -5.32 -33.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.574 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds