Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35671 * 117.00243 * 2 1 4 4 C 1.39111 * 120.07672 * 179.97438 * 3 2 1 5 5 N 1.31974 * 119.91609 * 180.02562 * 4 3 2 6 6 C 1.32236 * 120.06546 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.92649 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46953 * 334.99918 * 7 6 5 9 9 C 1.53001 * 109.46945 * 214.99721 * 7 6 5 10 10 C 1.50701 * 109.46977 * 94.99980 * 7 6 5 11 11 H 1.08000 * 119.99994 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99927 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99967 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99978 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.46854 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46772 * 120.00325 * 14 12 10 17 17 H 1.48500 * 109.47100 * 240.00540 * 14 12 10 18 18 C 1.38193 * 120.14797 * 0.02562 * 6 5 4 19 19 N 1.32235 * 120.08402 * 359.97438 * 18 6 5 20 20 H 1.08996 * 109.47073 * 60.00261 * 1 2 3 21 21 H 1.09003 * 109.46896 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47341 * 299.99832 * 1 2 3 23 23 H 1.08002 * 120.04607 * 0.05184 * 4 3 2 24 24 H 1.09004 * 109.46828 * 60.00874 * 9 7 6 25 25 H 1.09005 * 109.46782 * 179.97438 * 9 7 6 26 26 H 1.08989 * 109.47568 * 300.00235 * 9 7 6 27 27 H 0.97000 * 120.00394 * 179.97438 * 13 12 10 28 28 H 1.07993 * 119.95609 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4341 1.2834 0.0005 5 7 4.0300 2.4610 0.0010 6 6 3.3080 3.5688 0.0016 7 6 3.9917 4.9118 0.0027 8 1 4.9864 4.8127 0.4373 9 6 3.1697 5.9018 0.8305 10 6 4.1097 5.4166 -1.4123 11 1 3.7275 4.8244 -2.2306 12 6 4.7048 6.6350 -1.6622 13 7 5.1698 7.3564 -0.6658 14 14 4.8518 7.2604 -3.4163 15 1 4.2560 6.2684 -4.3470 16 1 4.1310 8.5526 -3.5430 17 1 6.2846 7.4576 -3.7531 18 6 1.9279 3.4978 0.0021 19 7 1.3247 2.3211 0.0016 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 4.0242 0.3789 0.0001 24 1 3.0844 5.5367 1.8540 25 1 3.6645 6.8731 0.8317 26 1 2.1751 6.0009 0.3960 27 1 5.5888 8.2134 -0.8416 28 1 1.3413 4.4045 0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261140828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = 3.648161 kcal Electronic energy + Delta-G solvation = -13255.691870 eV Core-core repulsion = 10886.327003 eV Total energy + Delta-G solvation = -2369.364867 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.72763 -38.12299 -34.59570 -33.42137 -31.53212 -28.95636 -26.84196 -25.36227 -24.01251 -23.19962 -20.36787 -18.06992 -17.43096 -16.44416 -15.85621 -15.28852 -14.48233 -14.31777 -14.03100 -13.67919 -12.74924 -12.48501 -11.82006 -11.56464 -11.27100 -11.01676 -10.96816 -10.74814 -10.49318 -10.42956 -10.23914 -9.96769 -9.18097 -8.62946 -8.34941 -7.90639 -6.08436 -4.15885 1.44963 1.74727 3.26567 3.26636 3.34736 3.39397 4.26065 4.43635 4.59215 4.87456 5.09738 5.23910 5.31850 5.36716 5.61902 5.83598 5.98364 6.02147 6.62866 6.72848 6.96235 7.06538 7.42214 7.58318 7.68088 7.85269 7.99879 8.24381 8.47828 8.84694 9.48767 10.97359 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.051389 B = 0.007942 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.733593 B = 3524.766275 C = 3651.378048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.230 3.770 4 C 0.040 3.960 5 N -0.411 5.411 6 C 0.097 3.903 7 C 0.089 3.911 8 H 0.052 0.948 9 C -0.138 4.138 10 C -0.506 4.506 11 H 0.055 0.945 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.084 3.916 19 N -0.500 5.500 20 H 0.055 0.945 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.165 0.835 24 H 0.012 0.988 25 H 0.093 0.907 26 H 0.032 0.968 27 H 0.262 0.738 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 -8.719 1.794 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.049 3.951 4 C -0.122 4.122 5 N -0.126 5.126 6 C -0.042 4.042 7 C 0.070 3.930 8 H 0.070 0.930 9 C -0.196 4.196 10 C -0.545 4.545 11 H 0.073 0.927 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.075 4.075 19 N -0.228 5.228 20 H 0.074 0.926 21 H 0.110 0.890 22 H 0.074 0.926 23 H 0.182 0.818 24 H 0.031 0.969 25 H 0.112 0.888 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.792 -8.842 1.832 11.299 hybrid contribution -0.247 0.422 -1.001 1.114 sum -7.039 -8.420 0.831 11.006 Atomic orbital electron populations 1.22782 0.78037 1.02398 1.02258 1.86203 1.22295 1.24381 1.88737 1.20872 0.91199 0.85420 0.97625 1.22867 0.89318 0.97691 1.02332 1.68481 1.38703 0.97388 1.08006 1.23099 0.91862 0.96642 0.92550 1.17793 0.95101 0.82972 0.97165 0.93049 1.21902 0.99029 1.03494 0.95219 1.20937 1.39143 1.03547 0.90885 0.92683 1.24906 0.94941 0.96509 0.97293 1.69876 1.39143 1.13024 1.30471 0.86451 0.77874 0.78686 0.84524 1.19817 1.20879 1.20854 1.23430 0.94072 0.94302 0.95658 1.67981 1.40314 0.98821 1.15702 0.92587 0.88993 0.92616 0.81808 0.96870 0.88841 0.94858 0.92767 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.40 101.05 1.05 1.54 15 2 O -0.31 -4.78 10.49 -18.71 -0.20 -4.98 15 3 C 0.23 4.14 7.49 -16.93 -0.13 4.01 15 4 C 0.04 0.74 11.18 -17.17 -0.19 0.55 15 5 N -0.41 -8.89 10.41 -9.16 -0.10 -8.98 15 6 C 0.10 2.17 5.72 -82.43 -0.47 1.69 15 7 C 0.09 2.21 2.63 -92.92 -0.24 1.97 15 8 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15 9 C -0.14 -3.14 8.40 37.16 0.31 -2.82 15 10 C -0.51 -13.64 8.55 -34.44 -0.29 -13.93 15 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 12 C 0.07 1.76 5.30 -17.82 -0.09 1.66 15 13 N -0.89 -24.44 11.32 55.43 0.63 -23.82 15 14 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 18 C 0.08 1.68 10.31 -17.39 -0.18 1.50 15 19 N -0.50 -9.43 9.40 -13.13 -0.12 -9.55 15 20 H 0.06 0.68 8.11 -51.93 -0.42 0.26 15 21 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.06 0.66 8.11 -51.93 -0.42 0.24 15 23 H 0.16 2.43 8.06 -52.49 -0.42 2.01 15 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 15 25 H 0.09 2.33 6.07 -51.93 -0.32 2.02 15 26 H 0.03 0.69 6.51 -51.94 -0.34 0.35 15 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 28 H 0.17 3.16 6.31 -52.49 -0.33 2.83 15 LS Contribution 246.10 15.07 3.71 3.71 Total: -1.00 -28.88 246.10 -4.40 -33.28 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.06 Total: -1.75 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.24 Total: -3.82 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.41 Total: -42.35 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.20 Total: -4.98 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.88 -4.40 -33.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.925 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds