Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36014 * 117.00180 * 2 1 4 4 C 1.39257 * 120.38938 * 180.02562 * 3 2 1 5 5 C 1.38305 * 118.46253 * 180.02562 * 4 3 2 6 6 C 1.39093 * 119.14899 * 0.02562 * 5 4 3 7 7 N 1.39254 * 119.64394 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.47075 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99964 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99973 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99891 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00035 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.46854 * 90.00427 * 13 11 9 15 15 H 1.48496 * 109.47001 * 210.00371 * 13 11 9 16 16 H 1.48503 * 109.47086 * 330.00318 * 13 11 9 17 17 N 1.32326 * 120.70818 * 359.97438 * 6 5 4 18 18 C 1.32000 * 121.67817 * 359.97438 * 17 6 5 19 19 H 1.08996 * 109.47402 * 59.99293 * 1 2 3 20 20 H 1.08997 * 109.47529 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46667 * 299.99899 * 1 2 3 22 22 H 1.08005 * 120.77034 * 0.02562 * 4 3 2 23 23 H 1.07995 * 120.42163 * 179.72970 * 5 4 3 24 24 H 0.96992 * 120.00311 * 180.02562 * 7 6 5 25 25 H 1.09003 * 109.47632 * 300.00569 * 8 7 6 26 26 H 1.09007 * 109.47375 * 60.00691 * 8 7 6 27 27 H 0.96994 * 120.00100 * 179.97438 * 12 11 9 28 28 H 1.07999 * 119.60931 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0228 2.5469 0.0000 6 6 3.2097 3.6753 0.0016 7 7 3.7889 4.9417 0.0017 8 6 5.2474 5.0800 0.0006 9 6 5.6133 6.5420 0.0015 10 1 4.8371 7.2929 0.0024 11 6 6.9390 6.9208 0.0002 12 7 7.2583 8.1966 0.0015 13 14 8.2816 5.6219 -0.0020 14 1 8.6358 5.2786 -1.4026 15 1 9.4811 6.1488 0.6970 16 1 7.7950 4.4059 0.6979 17 7 1.8916 3.5584 0.0021 18 6 1.3003 2.3783 0.0006 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.0431 0.4004 -0.0014 23 1 5.0981 2.6475 0.0040 24 1 3.2268 5.7321 0.0032 25 1 5.6584 4.6024 0.8900 26 1 5.6570 4.6032 -0.8900 27 1 8.1909 8.4632 0.0010 28 1 0.2218 2.3218 0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = 2.334715 kcal Electronic energy + Delta-G solvation = -12875.098206 eV Core-core repulsion = 10505.676384 eV Total energy + Delta-G solvation = -2369.421822 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.21478 -38.03096 -35.02978 -32.53676 -32.05052 -29.31537 -27.70656 -26.54453 -23.34760 -22.49812 -21.00487 -18.05451 -17.51561 -16.67107 -16.11110 -15.66729 -14.78833 -14.23469 -14.00384 -13.96718 -13.26939 -12.85583 -12.66861 -12.57757 -12.15395 -11.80647 -11.43146 -10.97049 -10.85733 -10.05108 -9.55016 -9.42441 -9.20338 -9.05465 -8.72025 -6.79972 -6.25286 -4.27886 1.54328 1.85516 3.19196 3.26729 3.27538 3.42219 3.99946 4.25741 4.26421 4.89692 4.96344 5.08471 5.12795 5.14259 5.36221 5.41266 5.71325 5.93173 6.14903 6.30157 6.52806 6.77711 6.91384 7.29926 7.47583 7.63547 8.15511 8.51285 8.64845 8.81468 9.33000 10.87095 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.072040 B = 0.006554 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.581131 B = 4271.185837 C = 4639.321313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.058 4.058 5 C -0.208 4.208 6 C 0.385 3.615 7 N -0.699 5.699 8 C 0.227 3.773 9 C -0.542 4.542 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.879 3.121 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.263 1.263 17 N -0.527 5.527 18 C 0.074 3.926 19 H 0.051 0.949 20 H 0.094 0.906 21 H 0.051 0.949 22 H 0.135 0.865 23 H 0.138 0.862 24 H 0.402 0.598 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.268 0.732 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -14.473 0.015 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C -0.064 4.064 4 C -0.084 4.084 5 C -0.234 4.234 6 C 0.146 3.854 7 N -0.328 5.328 8 C 0.104 3.896 9 C -0.580 4.580 10 H 0.099 0.901 11 C -0.127 4.127 12 N -0.528 5.528 13 Si 0.705 3.295 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.187 1.187 17 N -0.247 5.247 18 C -0.085 4.085 19 H 0.070 0.930 20 H 0.113 0.887 21 H 0.070 0.930 22 H 0.152 0.848 23 H 0.156 0.844 24 H 0.238 0.762 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.067 -13.747 0.019 16.468 hybrid contribution 0.828 -0.812 -0.018 1.160 sum -8.239 -14.559 0.001 16.728 Atomic orbital electron populations 1.22940 0.79297 1.03355 1.01048 1.86009 1.20488 1.26483 1.90480 1.19565 0.92959 0.85272 1.08563 1.20580 0.91437 0.97835 0.98588 1.21349 1.01153 0.90947 1.09905 1.18576 0.87900 0.87405 0.91479 1.45014 1.08031 1.02899 1.76881 1.19561 0.75636 0.98625 0.95792 1.21038 0.93917 0.89805 1.53201 0.90131 1.24816 0.98432 0.95488 0.93984 1.69877 1.18587 1.15082 1.49204 0.86807 0.81642 0.82145 0.78918 1.19798 1.20789 1.18741 1.67087 1.10287 1.26880 1.20402 1.22401 0.99465 0.86614 1.00021 0.93027 0.88733 0.93036 0.84756 0.84393 0.76233 0.96134 0.96583 0.92181 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.82 101.05 0.99 1.25 15 2 O -0.32 -4.30 10.51 -19.79 -0.21 -4.51 15 3 C -0.01 -0.22 6.71 -39.12 -0.26 -0.48 15 4 C -0.06 -0.90 10.12 -39.18 -0.40 -1.30 15 5 C -0.21 -3.69 9.33 -39.24 -0.37 -4.05 15 6 C 0.38 7.59 7.65 -154.85 -1.18 6.40 15 7 N -0.70 -14.94 5.73 -61.55 -0.35 -15.29 15 8 C 0.23 5.29 3.71 -5.19 -0.02 5.27 15 9 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 15 10 H 0.08 2.36 7.84 -52.49 -0.41 1.95 15 11 C 0.08 2.13 5.47 -17.82 -0.10 2.03 15 12 N -0.89 -26.28 13.96 55.43 0.77 -25.50 15 13 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 15 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.26 -5.78 6.54 56.52 0.37 -5.41 15 17 N -0.53 -9.85 10.39 -12.28 -0.13 -9.98 15 18 C 0.07 1.15 10.21 -17.39 -0.18 0.97 15 19 H 0.05 0.42 7.68 -51.93 -0.40 0.02 15 20 H 0.09 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.42 7.67 -51.93 -0.40 0.02 15 22 H 0.13 1.75 8.06 -52.48 -0.42 1.33 15 23 H 0.14 2.39 6.70 -52.49 -0.35 2.03 15 24 H 0.40 8.53 8.44 -40.82 -0.34 8.19 15 25 H 0.02 0.49 6.98 -51.93 -0.36 0.12 15 26 H 0.02 0.38 7.36 -51.93 -0.38 -0.01 15 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 28 H 0.15 1.84 6.30 -52.49 -0.33 1.51 15 LS Contribution 245.15 15.07 3.69 3.69 Total: -1.00 -30.13 245.15 -5.73 -35.86 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -2.99 Total: 5.06 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.85 Total: -5.04 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.29 Total: -50.78 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.21 Total: -4.51 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.13 -5.73 -35.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.198 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds