Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.50706 * 109.46702 * 179.97438 * 3 2 1 5 5 N 1.31790 * 119.12196 * 269.72288 * 4 3 2 6 6 C 1.32340 * 120.81702 * 179.75958 * 5 4 3 7 7 C 1.38596 * 119.10371 * 0.51448 * 6 5 4 8 8 C 1.50695 * 120.79978 * 179.72901 * 7 6 5 9 9 C 1.50705 * 109.46877 * 270.01684 * 8 7 6 10 10 H 1.07997 * 119.99964 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99885 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00164 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47525 * 89.99522 * 13 11 9 15 15 H 1.48501 * 109.47146 * 209.99668 * 13 11 9 16 16 H 1.48504 * 109.47102 * 329.99218 * 13 11 9 17 17 C 1.38600 * 118.39588 * 359.74462 * 7 6 5 18 18 N 1.31799 * 119.11957 * 89.99912 * 4 3 2 19 19 H 1.09000 * 109.47187 * 300.00778 * 1 2 3 20 20 H 1.09002 * 109.47018 * 59.99971 * 1 2 3 21 21 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46890 * 59.99811 * 3 2 1 23 23 H 1.09000 * 109.47141 * 299.99454 * 3 2 1 24 24 H 1.07993 * 120.44684 * 180.28023 * 6 5 4 25 25 H 1.08991 * 109.47674 * 30.01620 * 8 7 6 26 26 H 1.09000 * 109.47040 * 150.02112 * 8 7 6 27 27 H 0.96993 * 120.00120 * 179.97438 * 12 11 9 28 28 H 1.08009 * 120.44308 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1519 1.1416 1.1522 6 6 5.4702 1.0325 1.1919 7 6 6.1781 0.9763 0.0017 8 6 7.6805 0.8582 0.0024 9 6 8.2925 2.2354 0.0024 10 1 7.6571 3.1087 0.0015 11 6 9.6637 2.3804 0.0024 12 7 10.4374 1.3169 0.0029 13 14 10.4223 4.0874 0.0030 14 1 10.6233 4.5393 1.4032 15 1 11.7313 4.0476 -0.6970 16 1 9.5154 5.0324 -0.6968 17 6 5.4710 1.0316 -1.1890 18 7 4.1524 1.1356 -1.1505 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.6885 1.8464 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 5.9876 0.9917 2.1389 25 1 8.0021 0.3178 0.8925 26 1 8.0028 0.3174 -0.8874 27 1 11.4019 1.4190 0.0025 28 1 5.9894 0.9909 -2.1357 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261151368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = -28.326331 kcal Electronic energy + Delta-G solvation = -12801.817124 eV Core-core repulsion = 10431.065739 eV Total energy + Delta-G solvation = -2370.751385 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.00951 -38.77865 -35.96442 -34.65585 -33.95024 -30.70173 -28.19648 -26.71050 -25.55496 -24.85922 -22.63730 -18.68293 -18.57085 -18.10563 -17.53186 -16.71987 -16.42757 -15.64434 -15.50789 -15.03734 -14.46422 -14.32798 -13.58882 -13.49030 -13.21218 -13.05417 -12.63318 -12.39583 -12.29130 -11.76072 -11.70418 -11.40381 -10.71570 -10.65787 -10.19637 -10.10136 -8.23941 -6.36640 -0.06778 0.10914 1.41510 1.42434 1.52938 2.36132 2.45486 2.90068 3.08922 3.17481 3.46733 3.80457 4.06377 4.13174 4.26166 4.36968 4.56550 4.59889 4.61360 4.87769 4.97156 5.28363 5.46962 5.52765 5.68651 5.99104 6.09063 6.13791 6.74214 7.07466 7.32609 8.85830 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.076829 B = 0.006093 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.359940 B = 4594.086919 C = 4665.866244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.144 3.856 4 C 0.269 3.731 5 N -0.513 5.513 6 C 0.134 3.866 7 C -0.143 4.143 8 C 0.067 3.933 9 C -0.533 4.533 10 H 0.052 0.948 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.963 3.037 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.269 1.269 17 C 0.134 3.866 18 N -0.513 5.513 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.180 0.820 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.267 0.733 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.675 0.536 0.012 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C 0.066 3.934 4 C 0.000 4.000 5 N -0.228 5.228 6 C -0.032 4.032 7 C -0.147 4.147 8 C 0.029 3.971 9 C -0.571 4.571 10 H 0.071 0.929 11 C -0.187 4.187 12 N -0.562 5.562 13 Si 0.787 3.213 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.193 1.193 17 C -0.032 4.032 18 N -0.228 5.228 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.117 0.883 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.197 0.803 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.423 0.390 0.009 15.428 hybrid contribution 1.656 0.728 0.004 1.809 sum -13.767 1.118 0.013 13.812 Atomic orbital electron populations 1.23006 0.78111 1.04195 1.01558 1.87887 1.22567 1.27138 1.95751 1.20949 0.83328 0.85813 1.03309 1.23184 0.97976 0.94874 0.83927 1.68172 1.10333 1.13603 1.30687 1.23352 0.88873 0.91616 0.99319 1.22221 1.00223 0.96923 0.95359 1.17997 0.84590 0.96851 0.97657 1.21268 0.91720 0.92176 1.51936 0.92922 1.25806 0.97666 1.00810 0.94375 1.70042 1.04924 1.30693 1.50580 0.85482 0.77784 0.79493 0.78516 1.19774 1.20507 1.19339 1.23353 0.88883 0.91623 0.99315 1.68174 1.10302 1.13596 1.30733 0.92374 0.92368 0.88343 0.89281 0.89282 0.80321 0.96093 0.96096 0.92365 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 15 2 O -0.41 -11.72 10.69 -148.98 -1.59 -13.31 15 3 C 0.14 3.96 6.37 71.24 0.45 4.41 15 4 C 0.27 9.77 7.27 138.75 1.01 10.78 15 5 N -0.51 -19.58 10.33 -187.84 -1.94 -21.52 15 6 C 0.13 5.25 11.01 84.70 0.93 6.19 15 7 C -0.14 -6.06 5.10 -19.69 -0.10 -6.16 15 8 C 0.07 3.31 5.15 29.10 0.15 3.46 15 9 C -0.53 -28.53 9.09 25.60 0.23 -28.30 15 10 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 11 C 0.01 0.69 5.46 84.65 0.46 1.16 15 12 N -0.92 -52.66 13.29 21.45 0.28 -52.38 15 13 Si 0.96 42.44 29.54 68.60 2.03 44.46 15 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 17 C 0.13 5.26 11.01 84.70 0.93 6.19 15 18 N -0.51 -19.60 10.34 -187.83 -1.94 -21.54 15 19 H 0.06 0.81 8.14 -2.39 -0.02 0.79 15 20 H 0.06 0.81 8.14 -2.39 -0.02 0.79 15 21 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.18 6.35 8.06 -2.91 -0.02 6.33 15 25 H 0.02 1.07 8.10 -2.39 -0.02 1.05 15 26 H 0.02 1.07 8.10 -2.39 -0.02 1.05 15 27 H 0.27 14.36 8.31 -92.71 -0.77 13.59 15 28 H 0.18 6.36 8.06 -2.91 -0.02 6.34 15 Total: -1.00 -63.04 256.06 3.30 -59.74 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.14 Total: 5.13 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.32 Total: -0.58 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -3.60 Total: -95.44 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.59 Total: -13.31 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -63.04 3.30 -59.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.415 kcal (2) G-P(sol) polarization free energy of solvation -63.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds