Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 119.99881 * 2 1 4 4 C 1.38233 * 120.00269 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99440 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99619 * 179.72311 * 5 4 3 7 7 C 1.52990 * 109.46914 * 164.23775 * 6 5 4 8 8 F 1.39898 * 109.47135 * 44.23384 * 6 5 4 9 9 C 1.50700 * 109.46834 * 284.23549 * 6 5 4 10 10 H 1.08003 * 120.00287 * 357.20811 * 9 6 5 11 11 C 1.37878 * 119.99980 * 177.20393 * 9 6 5 12 12 N 1.31509 * 120.00284 * 180.02562 * 11 9 6 13 13 Si 1.86802 * 119.99828 * 359.97438 * 11 9 6 14 14 H 1.48492 * 109.47224 * 90.00000 * 13 11 9 15 15 H 1.48510 * 109.47222 * 210.00266 * 13 11 9 16 16 H 1.48506 * 109.47223 * 330.00111 * 13 11 9 17 17 C 1.38227 * 120.00251 * 359.97438 * 5 4 3 18 18 C 1.38229 * 120.00265 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.47171 * 90.00122 * 1 2 3 20 20 H 1.09002 * 109.46687 * 209.99798 * 1 2 3 21 21 H 1.09002 * 109.47129 * 329.99890 * 1 2 3 22 22 H 1.08008 * 119.99860 * 359.97438 * 3 2 1 23 23 H 1.07997 * 120.00202 * 180.02562 * 4 3 2 24 24 H 1.08996 * 109.47438 * 59.99822 * 7 6 5 25 25 H 1.09007 * 109.47082 * 179.97438 * 7 6 5 26 26 H 1.09002 * 109.47082 * 299.99510 * 7 6 5 27 27 H 0.97004 * 120.00599 * 179.97438 * 12 11 9 28 28 H 1.08006 * 120.00163 * 179.97438 * 17 5 4 29 29 H 1.08002 * 119.99665 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 -0.0041 7 6 6.2902 -1.3868 0.3901 8 9 6.2485 0.9480 0.9113 9 6 6.2757 0.3453 -1.3843 10 1 5.5719 0.5004 -2.1886 11 6 7.6291 0.4631 -1.6202 12 7 8.0628 0.7648 -2.8245 13 14 8.8464 0.1957 -0.2288 14 1 9.2324 -1.2373 -0.1773 15 1 10.0554 1.0259 -0.4624 16 1 8.2193 0.5860 1.0595 17 6 3.5806 -1.1970 0.0027 18 6 2.1982 -1.1971 0.0005 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6581 2.1325 -0.0004 23 1 4.1205 2.1326 0.0010 24 1 5.9242 -2.1253 -0.3232 25 1 7.3802 -1.3870 0.3855 26 1 5.9307 -1.6365 1.3883 27 1 9.0149 0.8481 -2.9904 28 1 4.1206 -2.1324 0.0031 29 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156592.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -24.515670 kcal Electronic energy + Delta-G solvation = -13523.421547 eV Core-core repulsion = 11132.915443 eV Total energy + Delta-G solvation = -2390.506104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.36697 -38.79577 -34.18835 -32.30877 -30.67339 -29.96688 -26.29881 -25.38989 -22.11684 -21.71174 -19.52155 -16.91517 -16.28192 -15.00634 -14.95709 -14.54589 -13.61998 -13.48269 -13.35886 -13.10364 -12.90807 -12.48966 -12.21662 -11.95987 -11.56017 -11.42219 -11.26842 -10.53940 -10.37136 -10.33659 -10.05130 -9.13911 -8.94118 -8.69564 -8.36530 -7.89831 -6.22731 -4.34670 1.90240 1.96616 3.25722 3.39535 3.52215 4.31712 4.36531 5.08698 5.20341 5.25303 5.43475 5.56044 5.61250 5.75230 5.95669 5.98666 6.04225 6.15865 6.21131 6.29600 6.56416 6.61125 6.75125 6.95905 7.04927 7.10116 7.36136 7.53128 7.57427 8.30045 8.77999 9.36621 10.88013 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054779 B = 0.009704 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.020074 B = 2884.816840 C = 2968.941849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.126 4.126 4 C -0.094 4.094 5 C -0.068 4.068 6 C 0.239 3.761 7 C -0.168 4.168 8 F -0.229 7.229 9 C -0.544 4.544 10 H 0.085 0.915 11 C 0.086 3.914 12 N -0.884 5.884 13 Si 0.872 3.128 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.234 1.234 17 C -0.114 4.114 18 C -0.127 4.127 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.115 0.885 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.268 0.732 28 H 0.124 0.876 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -2.964 6.414 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.144 4.144 4 C -0.112 4.112 5 C -0.068 4.068 6 C 0.221 3.779 7 C -0.226 4.226 8 F -0.210 7.210 9 C -0.581 4.581 10 H 0.103 0.897 11 C -0.119 4.119 12 N -0.519 5.519 13 Si 0.700 3.300 14 H -0.209 1.209 15 H -0.223 1.223 16 H -0.157 1.157 17 C -0.132 4.132 18 C -0.145 4.145 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.133 0.867 23 H 0.142 0.858 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.819 -2.890 6.319 12.029 hybrid contribution 0.856 -0.094 0.430 0.962 sum -8.964 -2.983 6.749 11.610 Atomic orbital electron populations 1.20709 0.91933 1.02003 1.01745 1.19776 0.95429 0.93464 1.02043 1.20930 0.94160 0.97038 1.02275 1.21014 0.93536 0.98477 0.98186 1.20442 0.96449 0.93162 0.96754 1.17772 0.86876 0.84750 0.88515 1.22618 1.01236 0.98694 1.00002 1.92756 1.89568 1.68324 1.70323 1.21069 0.93375 1.51156 0.92528 0.89726 1.24964 0.98365 0.92845 0.95699 1.69894 1.15197 1.46015 1.20812 0.87294 0.80080 0.77474 0.85182 1.20862 1.22323 1.15725 1.21134 0.93768 0.98067 1.00197 1.20885 0.94125 0.96981 1.02557 0.91733 0.92118 0.92080 0.86734 0.85800 0.90906 0.92819 0.93779 0.92210 0.85779 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 36.01 0.36 -0.88 15 2 C -0.11 -1.67 5.88 -104.62 -0.62 -2.29 15 3 C -0.13 -2.14 9.70 -39.58 -0.38 -2.52 15 4 C -0.09 -1.91 9.38 -39.58 -0.37 -2.28 15 5 C -0.07 -1.46 4.87 -104.62 -0.51 -1.97 15 6 C 0.24 5.83 0.98 -92.93 -0.09 5.74 15 7 C -0.17 -3.63 7.33 37.15 0.27 -3.36 15 8 F -0.23 -5.85 13.27 2.25 0.03 -5.82 15 9 C -0.54 -15.39 8.83 -34.44 -0.30 -15.70 15 10 H 0.08 2.60 7.98 -52.48 -0.42 2.18 15 11 C 0.09 2.50 5.45 -17.82 -0.10 2.40 15 12 N -0.88 -26.83 13.96 55.43 0.77 -26.05 15 13 Si 0.87 21.91 24.11 -169.99 -4.10 17.81 15 14 H -0.28 -6.79 6.87 56.52 0.39 -6.40 15 15 H -0.30 -7.44 7.11 56.52 0.40 -7.04 15 16 H -0.23 -5.79 5.35 56.52 0.30 -5.49 15 17 C -0.11 -2.12 9.10 -39.59 -0.36 -2.48 15 18 C -0.13 -2.06 9.70 -39.59 -0.38 -2.45 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.62 8.09 -51.93 -0.42 0.20 15 21 H 0.06 0.63 8.09 -51.93 -0.42 0.21 15 22 H 0.11 1.64 8.06 -52.48 -0.42 1.21 15 23 H 0.12 2.56 7.98 -52.49 -0.42 2.14 15 24 H 0.07 1.45 6.82 -51.93 -0.35 1.10 15 25 H 0.05 1.21 3.64 -51.92 -0.19 1.02 15 26 H 0.04 0.83 8.12 -51.93 -0.42 0.41 15 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 28 H 0.12 2.12 5.96 -52.48 -0.31 1.81 15 29 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 LS Contribution 241.13 15.07 3.63 3.63 Total: -1.00 -30.63 241.13 -5.62 -36.25 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.47 Total: -0.02 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.48 Total: -25.80 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.05 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.03 Total: -5.82 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.10 Total: 17.81 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.63 -5.62 -36.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156592.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.735 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds