Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 119.99881 * 2 1 4 4 C 1.38233 * 120.00269 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99440 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99619 * 179.72311 * 5 4 3 7 7 C 1.52990 * 109.46914 * 164.23775 * 6 5 4 8 8 F 1.39898 * 109.47135 * 44.23384 * 6 5 4 9 9 C 1.50700 * 109.46834 * 284.23549 * 6 5 4 10 10 H 1.08003 * 120.00287 * 357.20811 * 9 6 5 11 11 C 1.37878 * 119.99980 * 177.20393 * 9 6 5 12 12 N 1.31509 * 120.00284 * 180.02562 * 11 9 6 13 13 Si 1.86802 * 119.99828 * 359.97438 * 11 9 6 14 14 H 1.48492 * 109.47224 * 90.00000 * 13 11 9 15 15 H 1.48510 * 109.47222 * 210.00266 * 13 11 9 16 16 H 1.48506 * 109.47223 * 330.00111 * 13 11 9 17 17 C 1.38227 * 120.00251 * 359.97438 * 5 4 3 18 18 C 1.38229 * 120.00265 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.47171 * 90.00122 * 1 2 3 20 20 H 1.09002 * 109.46687 * 209.99798 * 1 2 3 21 21 H 1.09002 * 109.47129 * 329.99890 * 1 2 3 22 22 H 1.08008 * 119.99860 * 359.97438 * 3 2 1 23 23 H 1.07997 * 120.00202 * 180.02562 * 4 3 2 24 24 H 1.08996 * 109.47438 * 59.99822 * 7 6 5 25 25 H 1.09007 * 109.47082 * 179.97438 * 7 6 5 26 26 H 1.09002 * 109.47082 * 299.99510 * 7 6 5 27 27 H 0.97004 * 120.00599 * 179.97438 * 12 11 9 28 28 H 1.08006 * 120.00163 * 179.97438 * 17 5 4 29 29 H 1.08002 * 119.99665 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 -0.0041 7 6 6.2902 -1.3868 0.3901 8 9 6.2485 0.9480 0.9113 9 6 6.2757 0.3453 -1.3843 10 1 5.5719 0.5004 -2.1886 11 6 7.6291 0.4631 -1.6202 12 7 8.0628 0.7648 -2.8245 13 14 8.8464 0.1957 -0.2288 14 1 9.2324 -1.2373 -0.1773 15 1 10.0554 1.0259 -0.4624 16 1 8.2193 0.5860 1.0595 17 6 3.5806 -1.1970 0.0027 18 6 2.1982 -1.1971 0.0005 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6581 2.1325 -0.0004 23 1 4.1205 2.1326 0.0010 24 1 5.9242 -2.1253 -0.3232 25 1 7.3802 -1.3870 0.3855 26 1 5.9307 -1.6365 1.3883 27 1 9.0149 0.8481 -2.9904 28 1 4.1206 -2.1324 0.0031 29 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156592.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -42.987660 kcal Electronic energy + Delta-G solvation = -13524.222553 eV Core-core repulsion = 11132.915443 eV Total energy + Delta-G solvation = -2391.307110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.33093 -40.17808 -35.93558 -34.20716 -32.12883 -31.45806 -27.64913 -27.35980 -23.65499 -23.16786 -21.11253 -19.03711 -18.01840 -16.88409 -16.46503 -15.96787 -15.31045 -15.02509 -14.97615 -14.70434 -14.41063 -14.35375 -13.94647 -13.10138 -12.99422 -12.92437 -12.76135 -12.42703 -12.24922 -11.92985 -11.64574 -11.15090 -10.86645 -10.81090 -9.74798 -9.32214 -8.45501 -6.61585 0.50597 0.57684 1.25776 1.35962 1.51758 2.26220 2.88728 2.93887 3.79162 3.98773 4.12717 4.16106 4.23342 4.42091 4.55038 4.61820 4.75007 4.90177 4.91664 4.99943 5.04140 5.19220 5.29159 5.33950 5.43133 5.59274 5.74581 5.92948 6.10039 6.23070 6.47516 7.13246 8.69192 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054779 B = 0.009704 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.020074 B = 2884.816840 C = 2968.941849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.105 4.105 6 C 0.232 3.768 7 C -0.165 4.165 8 F -0.239 7.239 9 C -0.548 4.548 10 H 0.042 0.958 11 C 0.034 3.966 12 N -0.930 5.930 13 Si 0.931 3.069 14 H -0.260 1.260 15 H -0.297 1.297 16 H -0.229 1.229 17 C -0.121 4.121 18 C -0.124 4.124 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.140 0.860 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.272 0.728 28 H 0.137 0.863 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 -4.454 7.980 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.106 4.106 6 C 0.214 3.786 7 C -0.222 4.222 8 F -0.220 7.220 9 C -0.585 4.585 10 H 0.060 0.940 11 C -0.167 4.167 12 N -0.567 5.567 13 Si 0.755 3.245 14 H -0.186 1.186 15 H -0.225 1.225 16 H -0.151 1.151 17 C -0.139 4.139 18 C -0.142 4.142 19 H 0.095 0.905 20 H 0.100 0.900 21 H 0.094 0.906 22 H 0.157 0.843 23 H 0.120 0.880 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.693 -4.391 7.893 14.775 hybrid contribution 1.264 0.414 -0.120 1.336 sum -10.428 -3.976 7.773 13.601 Atomic orbital electron populations 1.20794 0.88455 1.03863 1.03043 1.20322 0.97892 0.92553 0.99205 1.21221 0.92805 0.99140 1.01456 1.21041 0.95305 0.97442 1.00221 1.20356 0.94960 0.94958 1.00317 1.17844 0.89178 0.85628 0.85989 1.22548 1.00511 0.96997 1.02120 1.92710 1.89924 1.69086 1.70311 1.21273 0.92776 1.50547 0.93912 0.94003 1.25798 1.00298 0.92654 0.97960 1.70018 1.15809 1.47958 1.22954 0.86342 0.77433 0.78487 0.82189 1.18590 1.22505 1.15147 1.21340 0.95184 0.97333 1.00066 1.21331 0.93197 0.98890 1.00761 0.90512 0.89992 0.90645 0.84259 0.87998 0.89682 0.93765 0.90736 0.91937 0.84481 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.24 0.71 -1.23 15 2 C -0.10 -2.79 5.88 -19.87 -0.12 -2.90 15 3 C -0.13 -4.17 9.70 22.27 0.22 -3.96 15 4 C -0.12 -5.03 9.38 22.27 0.21 -4.82 15 5 C -0.11 -4.57 4.87 -19.87 -0.10 -4.67 15 6 C 0.23 11.38 0.98 -12.29 -0.01 11.37 15 7 C -0.16 -6.86 7.33 71.98 0.53 -6.33 15 8 F -0.24 -12.33 13.27 44.97 0.60 -11.73 15 9 C -0.55 -32.11 8.83 25.60 0.23 -31.89 15 10 H 0.04 2.73 7.98 -2.91 -0.02 2.70 15 11 C 0.03 1.98 5.45 84.66 0.46 2.45 15 12 N -0.93 -58.36 13.96 21.45 0.30 -58.06 15 13 Si 0.93 45.57 24.11 68.60 1.65 47.22 15 14 H -0.26 -11.76 6.87 99.48 0.68 -11.08 15 15 H -0.30 -14.50 7.11 99.48 0.71 -13.79 15 16 H -0.23 -10.92 5.35 99.48 0.53 -10.39 15 17 C -0.12 -4.32 9.10 22.27 0.20 -4.12 15 18 C -0.12 -3.59 9.70 22.27 0.22 -3.37 15 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.08 1.21 8.09 -2.39 -0.02 1.19 15 21 H 0.07 1.21 8.09 -2.39 -0.02 1.19 15 22 H 0.14 3.70 8.06 -2.91 -0.02 3.67 15 23 H 0.10 4.47 7.98 -2.91 -0.02 4.45 15 24 H 0.08 3.27 6.82 -2.39 -0.02 3.25 15 25 H 0.04 1.90 3.64 -2.38 -0.01 1.89 15 26 H 0.07 2.62 8.12 -2.39 -0.02 2.60 15 27 H 0.27 15.86 8.31 -92.71 -0.77 15.09 15 28 H 0.14 4.37 5.96 -2.91 -0.02 4.35 15 29 H 0.15 3.22 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -68.45 241.13 6.03 -62.42 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.94 Total: 9.63 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 2.55 Total: -49.48 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.30 Total: -58.06 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 0.60 Total: -11.73 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.65 Total: 47.22 kcal Total: -68.45 6.03 -62.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156592.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.429 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds