Wall clock time and date at job start Mon Mar 30 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35952 * 116.99982 * 2 1 4 4 C 1.39303 * 120.38386 * 180.02562 * 3 2 1 5 5 C 1.38264 * 118.46229 * 179.72761 * 4 3 2 6 6 C 1.39221 * 119.15135 * 0.47075 * 5 4 3 7 7 N 1.38951 * 119.65195 * 179.79565 * 6 5 4 8 8 C 1.46503 * 119.99893 * 184.72518 * 7 6 5 9 9 C 1.36894 * 120.00279 * 4.72472 * 7 6 5 10 10 H 1.08000 * 119.99983 * 338.51131 * 9 7 6 11 11 C 1.38789 * 120.00016 * 158.23051 * 9 7 6 12 12 N 1.31587 * 120.00061 * 350.40212 * 11 9 7 13 13 Si 1.86800 * 120.00025 * 170.40540 * 11 9 7 14 14 H 1.48494 * 109.47009 * 59.99751 * 13 11 9 15 15 H 1.48498 * 109.46998 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46797 * 300.00138 * 13 11 9 17 17 N 1.32459 * 120.69338 * 359.51633 * 6 5 4 18 18 C 1.31883 * 121.67960 * 0.25906 * 17 6 5 19 19 H 1.09005 * 109.46436 * 60.00315 * 1 2 3 20 20 H 1.09003 * 109.47555 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47472 * 300.00554 * 1 2 3 22 22 H 1.07996 * 120.76854 * 0.02562 * 4 3 2 23 23 H 1.08003 * 120.42531 * 180.27034 * 5 4 3 24 24 H 1.08997 * 109.47442 * 265.89377 * 8 7 6 25 25 H 1.08998 * 109.47217 * 25.89834 * 8 7 6 26 26 H 1.09008 * 109.46861 * 145.89225 * 8 7 6 27 27 H 0.97000 * 120.00313 * 179.97438 * 12 11 9 28 28 H 1.07998 * 119.60755 * 179.97438 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4368 1.2936 -0.0005 5 6 4.0229 2.5459 -0.0063 6 6 3.2091 3.6755 -0.0013 7 7 3.7871 4.9391 -0.0027 8 6 2.9424 6.1310 0.1069 9 6 5.1458 5.0702 -0.1066 10 1 5.7897 4.2442 0.1566 11 6 5.6955 6.2629 -0.5557 12 7 4.9178 7.1975 -1.0589 13 14 7.5393 6.5412 -0.4460 14 1 8.2449 5.5008 -1.2364 15 1 7.8703 7.8840 -0.9870 16 1 7.9685 6.4604 0.9735 17 7 1.8897 3.5583 -0.0009 18 6 1.2991 2.3791 0.0001 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 4.0431 0.3999 -0.0014 23 1 5.0982 2.6465 -0.0113 24 1 2.7111 6.5055 -0.8902 25 1 2.0169 5.8743 0.6223 26 1 3.4707 6.9001 0.6705 27 1 5.3019 8.0312 -1.3725 28 1 0.2206 2.3225 0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168403.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:25 Heat of formation + Delta-G solvation = 2.411556 kcal Electronic energy + Delta-G solvation = -13311.438368 eV Core-core repulsion = 10942.019878 eV Total energy + Delta-G solvation = -2369.418490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.19681 -39.18238 -37.17570 -33.69949 -33.08104 -30.13891 -28.48001 -27.97005 -25.69118 -23.67298 -22.56763 -19.39799 -18.91247 -17.83218 -17.41960 -16.49311 -16.34922 -15.43716 -15.34367 -15.28002 -14.57174 -13.94984 -13.85092 -13.43313 -13.07039 -12.92603 -12.64313 -12.56473 -12.24331 -12.12834 -12.10934 -11.14422 -10.48193 -10.17911 -10.03376 -8.45413 -8.16849 -5.75175 0.55774 0.77654 1.44416 1.50803 1.55607 2.25495 2.65263 2.90038 3.04436 3.34204 3.84464 4.08040 4.36527 4.51197 4.52928 4.66441 4.77101 4.84264 4.95954 5.03559 5.23395 5.28522 5.37721 5.44028 5.75534 6.04928 6.59648 6.69925 7.17931 7.39037 7.89449 8.73719 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.064137 B = 0.008008 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.462721 B = 3495.762162 C = 3871.887634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C -0.045 4.045 4 C -0.055 4.055 5 C -0.231 4.231 6 C 0.328 3.672 7 N -0.459 5.459 8 C 0.155 3.845 9 C -0.329 4.329 10 H 0.103 0.897 11 C -0.019 4.019 12 N -0.908 5.908 13 Si 1.000 3.000 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.266 1.266 17 N -0.564 5.564 18 C 0.075 3.925 19 H 0.055 0.945 20 H 0.120 0.880 21 H 0.056 0.944 22 H 0.151 0.849 23 H 0.133 0.867 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.269 0.731 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -8.957 2.077 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C -0.095 4.095 4 C -0.081 4.081 5 C -0.258 4.258 6 C 0.089 3.911 7 N -0.154 5.154 8 C 0.011 3.989 9 C -0.458 4.458 10 H 0.121 0.879 11 C -0.219 4.219 12 N -0.546 5.546 13 Si 0.823 3.177 14 H -0.189 1.189 15 H -0.207 1.207 16 H -0.191 1.191 17 N -0.286 5.286 18 C -0.085 4.085 19 H 0.073 0.927 20 H 0.138 0.862 21 H 0.075 0.925 22 H 0.169 0.831 23 H 0.150 0.850 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.341 -7.908 1.993 9.239 hybrid contribution 0.925 0.016 -0.149 0.937 sum -3.416 -7.892 1.844 8.795 Atomic orbital electron populations 1.23203 0.77502 1.05119 1.01520 1.85932 1.22448 1.25617 1.90820 1.19460 0.92934 0.85604 1.11530 1.20720 0.92054 0.97432 0.97898 1.21191 1.00668 0.90992 1.12964 1.18822 0.88643 0.87076 0.96514 1.42513 1.05639 1.01371 1.65877 1.20984 0.91904 0.86523 0.99468 1.19908 0.81035 1.01673 1.43135 0.87937 1.26289 1.04842 0.95752 0.95051 1.70251 1.37279 1.07676 1.39418 0.84876 0.76270 0.77579 0.78965 1.18936 1.20727 1.19076 1.67036 1.10282 1.28099 1.23213 1.22758 1.00328 0.86381 0.99051 0.92679 0.86151 0.92506 0.83099 0.84972 0.95241 0.93765 0.93482 0.92105 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.82 113.37 1.11 1.55 15 2 O -0.33 -10.30 10.51 -93.01 -0.98 -11.27 15 3 C -0.04 -1.63 6.71 22.62 0.15 -1.47 15 4 C -0.06 -2.08 10.12 22.53 0.23 -1.85 15 5 C -0.23 -10.17 9.31 22.51 0.21 -9.96 15 6 C 0.33 16.28 7.34 133.08 0.98 17.26 15 7 N -0.46 -24.63 3.13 -541.21 -1.69 -26.32 15 8 C 0.16 8.05 8.70 127.77 1.11 9.16 15 9 C -0.33 -17.59 9.14 84.03 0.77 -16.82 15 10 H 0.10 5.15 5.95 -2.91 -0.02 5.14 15 11 C -0.02 -0.97 5.16 84.86 0.44 -0.53 15 12 N -0.91 -49.88 10.46 21.64 0.23 -49.65 15 13 Si 1.00 40.82 29.56 68.60 2.03 42.85 15 14 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 15 H -0.28 -11.35 7.11 99.48 0.71 -10.65 15 16 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 17 N -0.56 -26.18 9.08 -192.78 -1.75 -27.93 15 18 C 0.07 2.85 10.21 84.78 0.87 3.72 15 19 H 0.05 1.07 7.68 -2.38 -0.02 1.06 15 20 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.06 1.08 7.67 -2.39 -0.02 1.07 15 22 H 0.15 4.71 8.06 -2.91 -0.02 4.68 15 23 H 0.13 5.68 6.07 -2.91 -0.02 5.66 15 24 H 0.03 1.61 7.45 -2.39 -0.02 1.60 15 25 H 0.04 2.13 7.32 -2.39 -0.02 2.12 15 26 H 0.05 2.48 7.09 -2.38 -0.02 2.47 15 27 H 0.27 13.97 8.31 -92.71 -0.77 13.20 15 28 H 0.17 5.15 6.30 -2.91 -0.02 5.13 15 Total: -1.00 -62.37 240.61 4.86 -57.51 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.17 Total: 13.76 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.86 Total: 1.05 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.22 Total: -103.90 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.98 Total: -11.27 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -62.37 4.86 -57.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168403.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.923 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds