Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 N 1.31070 * 126.65919 * 269.67874 * 10 9 7 12 12 N 1.28842 * 107.98985 * 179.89987 * 11 10 9 13 13 N 1.28744 * 109.39501 * 0.37964 * 12 11 10 14 14 N 1.29014 * 108.80843 * 359.76367 * 13 12 11 15 15 C 1.46507 * 126.43562 * 179.97438 * 14 13 12 16 16 C 1.53778 * 113.61257 * 39.16494 * 15 14 13 17 17 C 1.53956 * 87.01803 * 220.04563 * 16 15 14 18 18 C 1.53776 * 87.10957 * 25.36520 * 17 16 15 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 1.09002 * 112.84965 * 170.36166 * 15 14 13 23 23 H 1.08999 * 113.61702 * 334.56722 * 16 15 14 24 24 H 1.09001 * 113.61399 * 105.47231 * 16 15 14 25 25 H 1.08996 * 113.53887 * 270.80766 * 17 16 15 26 26 H 1.09002 * 113.74237 * 139.94768 * 17 16 15 27 27 H 1.09002 * 113.61165 * 220.08877 * 18 17 16 28 28 H 1.09002 * 113.61761 * 89.18697 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 7 2.7297 -4.2404 -1.0686 12 7 3.5282 -5.1663 -0.6622 13 7 3.5450 -5.1818 0.6250 14 7 2.7575 -4.2582 1.0624 15 6 2.4872 -3.9381 2.4663 16 6 3.7305 -4.0214 3.3675 17 6 2.8185 -4.6616 4.4298 18 6 1.9196 -5.1202 3.2695 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 1.9205 -3.0150 2.5884 23 1 4.4996 -4.6948 2.9892 24 1 4.1248 -3.0479 3.6586 25 1 2.3433 -3.9360 5.0899 26 1 3.2858 -5.4839 4.9715 27 1 0.8540 -5.0324 3.4816 28 1 2.1926 -6.0946 2.8643 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261205229.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = 99.455050 kcal Electronic energy + Delta-G solvation = -13544.148659 eV Core-core repulsion = 11211.231041 eV Total energy + Delta-G solvation = -2332.917617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.15152 -39.94178 -36.29643 -35.17453 -33.78500 -29.94562 -27.39486 -26.83624 -25.72354 -24.31074 -22.93168 -20.57405 -19.32131 -18.70725 -17.91362 -16.53210 -16.23688 -15.60868 -15.09250 -14.77819 -14.22590 -14.02476 -13.67209 -13.58391 -13.25438 -13.01322 -12.53098 -12.43011 -12.14053 -11.96610 -11.92349 -11.60615 -11.56171 -11.26685 -10.65448 -10.59460 -8.77769 -6.53635 0.25903 1.10941 1.19916 1.55082 1.60613 1.81599 2.51399 3.03329 3.15997 3.27949 3.32036 3.54740 3.69231 3.70911 4.29027 4.39875 4.57558 4.61586 4.72898 4.76066 4.84836 4.92283 4.94042 5.00965 5.28953 5.41029 5.65756 5.98140 6.41574 7.22990 7.59860 8.63416 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.010577 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.306791 B = 2646.720591 C = 3101.833998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 1.113 2.887 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.613 4.613 8 H 0.039 0.961 9 C 0.090 3.910 10 C 0.223 3.777 11 N -0.351 5.351 12 N -0.114 5.114 13 N -0.106 5.106 14 N -0.289 5.289 15 C 0.087 3.913 16 C -0.138 4.138 17 C -0.111 4.111 18 C -0.136 4.136 19 H 0.263 0.737 20 H 0.048 0.952 21 H 0.034 0.966 22 H 0.140 0.860 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -5.495 11.642 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.934 3.066 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.652 4.652 8 H 0.057 0.943 9 C 0.050 3.950 10 C -0.055 4.055 11 N -0.201 5.201 12 N -0.108 5.108 13 N -0.093 5.093 14 N -0.090 5.090 15 C -0.014 4.014 16 C -0.176 4.176 17 C -0.148 4.148 18 C -0.174 4.174 19 H 0.073 0.927 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.158 0.842 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.890 -4.861 10.985 12.627 hybrid contribution -0.422 -1.164 -0.098 1.242 sum 3.469 -6.025 10.887 12.917 Atomic orbital electron populations 1.70923 1.07516 1.30454 1.46581 1.27167 0.96383 1.05733 0.91928 0.82966 0.74273 0.71433 0.77929 1.20139 1.18949 1.20560 1.21879 0.93912 0.91459 1.57906 0.94264 1.17913 0.91086 0.87180 0.98844 1.26605 0.98999 0.97539 0.82330 1.74896 1.11527 1.07601 1.26057 1.78395 1.15384 1.15270 1.01734 1.78440 1.12763 1.10608 1.07458 1.48747 1.28130 1.21264 1.10881 1.24310 1.03044 1.02885 0.71124 1.23402 0.95524 1.03429 0.95264 1.22710 0.95596 1.01679 0.94836 1.23409 1.02126 0.96127 0.95744 0.92678 0.93387 0.94765 0.84188 0.89293 0.89191 0.87167 0.87985 0.88531 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.48 13.65 21.45 0.29 -51.19 15 2 C -0.01 -0.61 5.46 84.65 0.46 -0.14 15 3 Si 1.11 47.01 29.90 68.60 2.05 49.06 15 4 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 15 7 C -0.61 -32.78 9.09 25.60 0.23 -32.54 15 8 H 0.04 2.17 7.74 -2.91 -0.02 2.15 15 9 C 0.09 4.39 4.47 29.10 0.13 4.52 15 10 C 0.22 10.32 7.32 138.13 1.01 11.33 15 11 N -0.35 -17.38 12.36 -50.45 -0.62 -18.00 15 12 N -0.11 -5.30 13.43 37.01 0.50 -4.80 15 13 N -0.11 -4.36 12.68 37.02 0.47 -3.89 15 14 N -0.29 -11.29 3.45 -315.33 -1.09 -12.38 15 15 C 0.09 2.52 4.50 45.51 0.20 2.72 15 16 C -0.14 -3.15 7.76 31.18 0.24 -2.90 15 17 C -0.11 -1.74 8.09 31.18 0.25 -1.49 15 18 C -0.14 -2.89 7.85 31.12 0.24 -2.64 15 19 H 0.26 14.63 7.22 -92.71 -0.67 13.96 15 20 H 0.05 2.20 7.30 -2.39 -0.02 2.18 15 21 H 0.03 1.79 8.00 -2.39 -0.02 1.77 15 22 H 0.14 4.20 7.23 -2.39 -0.02 4.18 15 23 H 0.09 2.22 7.74 -2.39 -0.02 2.20 15 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 25 H 0.11 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.10 1.78 8.14 -2.39 -0.02 1.77 15 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 Total: -1.00 -64.50 247.27 5.64 -58.86 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.26 Total: 3.49 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 2.78 Total: -21.14 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -0.45 Total: -90.26 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.05 Total: 49.06 kcal Total: -64.50 5.64 -58.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205229.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.311 kcal (2) G-P(sol) polarization free energy of solvation -64.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds