Wall clock time and date at job start Mon Mar 30 2020 02:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48500 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47290 * 299.99731 * 3 2 1 6 6 H 1.48501 * 109.47273 * 59.99521 * 3 2 1 7 7 C 1.37870 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47344 * 179.97438 * 9 7 2 11 11 N 1.30294 * 126.34668 * 304.98066 * 10 9 7 12 12 N 1.28530 * 110.05622 * 180.02562 * 11 10 9 13 13 C 1.31221 * 109.85675 * 359.97438 * 12 11 10 14 14 N 1.38582 * 126.47333 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99910 * 180.02562 * 14 13 12 16 16 C 1.53002 * 117.49405 * 223.62654 * 15 14 13 17 17 C 1.52998 * 117.49742 * 155.00452 * 15 14 13 18 18 N 1.36455 * 107.05414 * 0.02562 * 13 12 11 19 19 H 0.97000 * 127.13743 * 180.02562 * 18 13 12 20 20 H 0.97006 * 120.00315 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46970 * 59.99821 * 9 7 2 22 22 H 1.08996 * 109.47337 * 299.99980 * 9 7 2 23 23 H 0.96996 * 120.00237 * 0.02562 * 14 13 12 24 24 H 1.09003 * 115.54923 * 9.33093 * 15 14 13 25 25 H 1.09003 * 117.50359 * 359.97438 * 16 15 14 26 26 H 1.09003 * 117.49672 * 145.02612 * 16 15 14 27 27 H 1.08997 * 117.49658 * 214.97965 * 17 15 14 28 28 H 1.09000 * 117.49863 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 7 3.1895 -3.8405 -0.8593 12 7 3.8338 -4.9128 -0.5642 13 6 3.3163 -5.4626 0.5089 14 7 3.7437 -6.6279 1.1253 15 6 3.0577 -7.1167 2.3240 16 6 3.9260 -7.6189 3.4793 17 6 3.1402 -8.6147 2.6237 18 7 2.2770 -4.6709 0.9027 19 1 1.6929 -4.8075 1.6650 20 1 -0.4851 0.8401 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8902 23 1 4.4971 -7.1200 0.7631 24 1 2.1303 -6.6030 2.5772 25 1 5.0075 -7.5862 3.3475 26 1 3.5698 -7.4357 4.4931 27 1 2.2672 -9.0865 3.0746 28 1 3.7045 -9.2367 1.9289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261206616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:07 Heat of formation + Delta-G solvation = 101.247476 kcal Electronic energy + Delta-G solvation = -12875.763543 eV Core-core repulsion = 10542.923651 eV Total energy + Delta-G solvation = -2332.839892 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.06153 -38.03930 -33.82360 -33.37147 -32.42192 -29.90287 -26.85159 -23.66367 -22.65247 -22.30462 -21.21730 -20.35221 -17.95023 -16.51879 -16.04015 -15.80652 -15.14667 -14.59637 -14.53755 -13.03015 -12.70342 -12.47002 -12.04865 -11.83501 -11.63804 -10.94881 -10.84155 -10.74883 -10.59898 -10.07326 -9.96554 -9.76433 -9.47213 -9.21342 -8.46863 -7.22134 -6.08466 -4.10253 2.69375 2.74723 3.32260 3.39837 3.47060 3.58341 3.66092 3.85587 4.45970 4.51702 4.61137 4.68458 5.27721 5.31666 5.35407 5.61462 5.72255 5.80281 5.93428 6.14911 6.50502 7.05096 7.35036 7.42925 7.58300 7.90230 7.95768 8.22784 8.94286 9.53388 9.70519 11.02162 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.057112 B = 0.006317 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.146814 B = 4431.234680 C = 4525.837949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.100 3.900 10 C 0.224 3.776 11 N -0.288 5.288 12 N -0.351 5.351 13 C 0.413 3.587 14 N -0.683 5.683 15 C 0.095 3.905 16 C -0.198 4.198 17 C -0.190 4.190 18 N -0.616 5.616 19 H 0.417 0.583 20 H 0.263 0.737 21 H 0.053 0.947 22 H 0.035 0.965 23 H 0.419 0.581 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -14.203 7.690 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.061 3.939 10 C -0.045 4.045 11 N -0.124 5.124 12 N -0.198 5.198 13 C 0.055 3.945 14 N -0.327 5.327 15 C -0.014 4.014 16 C -0.237 4.237 17 C -0.229 4.229 18 N -0.237 5.237 19 H 0.256 0.744 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.258 0.742 24 H 0.137 0.863 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.882 -13.782 6.397 15.683 hybrid contribution -0.435 0.288 1.549 1.634 sum 3.447 -13.495 7.946 16.035 Atomic orbital electron populations 1.69948 1.06020 1.26981 1.50714 1.24968 0.94929 0.99414 0.95025 0.86370 0.80258 0.82951 0.77532 1.19519 1.20791 1.21078 1.21033 0.93569 0.89072 1.50719 0.91667 1.17859 0.90523 0.86371 0.99130 1.25944 1.00048 0.91350 0.87177 1.73977 1.05945 1.09296 1.23207 1.74512 1.25864 1.07378 1.12063 1.20998 0.89868 0.89408 0.94219 1.42362 1.37711 1.23381 1.29235 1.21339 0.97313 0.95685 0.87027 1.23519 0.99439 1.04084 0.96681 1.23409 1.03431 0.92553 1.03490 1.44131 1.28783 1.22673 1.28135 0.74432 0.92779 0.92939 0.94701 0.74239 0.86275 0.88282 0.88059 0.87934 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.29 55.43 0.74 -25.15 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.50 -14.26 9.07 -34.44 -0.31 -14.57 15 8 H 0.07 1.90 7.74 -52.49 -0.41 1.50 15 9 C 0.10 2.55 5.60 -29.03 -0.16 2.39 15 10 C 0.22 5.19 7.54 -154.02 -1.16 4.03 15 11 N -0.29 -7.19 12.15 32.99 0.40 -6.79 15 12 N -0.35 -7.85 12.23 30.32 0.37 -7.48 15 13 C 0.41 7.53 8.99 -318.87 -2.87 4.66 15 14 N -0.68 -8.97 5.72 -55.04 -0.31 -9.29 15 15 C 0.09 0.94 6.58 -67.93 -0.45 0.50 15 16 C -0.20 -1.60 10.46 -26.73 -0.28 -1.88 15 17 C -0.19 -1.43 10.46 -26.73 -0.28 -1.71 15 18 N -0.62 -11.26 6.09 -10.37 -0.06 -11.32 15 19 H 0.42 6.04 7.85 -40.82 -0.32 5.72 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 21 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.42 4.91 8.95 -40.82 -0.37 4.54 15 24 H 0.12 1.11 6.94 -51.93 -0.36 0.75 15 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.10 0.65 8.14 -51.93 -0.42 0.22 15 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 LS Contribution 253.13 15.07 3.81 3.81 Total: -1.00 -32.60 253.13 -8.81 -41.41 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.12 Total: 3.11 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -5.61 Total: -5.05 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 1.13 Total: -60.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.60 -8.81 -41.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.656 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds