Wall clock time and date at job start Mon Mar 30 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48500 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47290 * 299.99731 * 3 2 1 6 6 H 1.48501 * 109.47273 * 59.99521 * 3 2 1 7 7 C 1.37870 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47344 * 179.97438 * 9 7 2 11 11 N 1.30294 * 126.34668 * 304.98066 * 10 9 7 12 12 N 1.28530 * 110.05622 * 180.02562 * 11 10 9 13 13 C 1.31221 * 109.85675 * 359.97438 * 12 11 10 14 14 N 1.38582 * 126.47333 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99910 * 180.02562 * 14 13 12 16 16 C 1.53002 * 117.49405 * 223.62654 * 15 14 13 17 17 C 1.52998 * 117.49742 * 155.00452 * 15 14 13 18 18 N 1.36455 * 107.05414 * 0.02562 * 13 12 11 19 19 H 0.97000 * 127.13743 * 180.02562 * 18 13 12 20 20 H 0.97006 * 120.00315 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46970 * 59.99821 * 9 7 2 22 22 H 1.08996 * 109.47337 * 299.99980 * 9 7 2 23 23 H 0.96996 * 120.00237 * 0.02562 * 14 13 12 24 24 H 1.09003 * 115.54923 * 9.33093 * 15 14 13 25 25 H 1.09003 * 117.50359 * 359.97438 * 16 15 14 26 26 H 1.09003 * 117.49672 * 145.02612 * 16 15 14 27 27 H 1.08997 * 117.49658 * 214.97965 * 17 15 14 28 28 H 1.09000 * 117.49863 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 7 3.1895 -3.8405 -0.8593 12 7 3.8338 -4.9128 -0.5642 13 6 3.3163 -5.4626 0.5089 14 7 3.7437 -6.6279 1.1253 15 6 3.0577 -7.1167 2.3240 16 6 3.9260 -7.6189 3.4793 17 6 3.1402 -8.6147 2.6237 18 7 2.2770 -4.6709 0.9027 19 1 1.6929 -4.8075 1.6650 20 1 -0.4851 0.8401 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8902 23 1 4.4971 -7.1200 0.7631 24 1 2.1303 -6.6030 2.5772 25 1 5.0075 -7.5862 3.3475 26 1 3.5698 -7.4357 4.4931 27 1 2.2672 -9.0865 3.0746 28 1 3.7045 -9.2367 1.9289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261206616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:06 Heat of formation + Delta-G solvation = 81.146795 kcal Electronic energy + Delta-G solvation = -12876.635174 eV Core-core repulsion = 10542.923651 eV Total energy + Delta-G solvation = -2333.711523 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.68656 -38.88971 -35.62508 -34.85421 -34.07964 -31.69241 -28.62802 -25.61264 -23.64735 -23.25595 -22.49952 -21.85392 -19.34265 -18.55308 -17.50637 -16.88955 -16.78199 -16.43977 -15.41391 -14.65283 -14.32276 -13.90263 -13.63122 -13.13344 -12.77599 -12.66523 -12.42276 -12.39958 -11.99433 -11.70241 -11.57575 -11.48267 -11.11453 -10.74674 -10.55554 -8.67580 -8.21292 -6.31872 1.13342 1.40407 1.42480 1.44736 1.57952 2.08381 2.37068 2.47012 2.95372 3.11261 3.78137 3.88313 4.04082 4.04826 4.35384 4.46365 4.58684 4.79253 5.02863 5.10742 5.22883 5.24668 5.37810 5.71240 5.77088 6.08191 6.42445 6.63078 6.75295 7.35603 8.04363 8.88028 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.057112 B = 0.006317 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.146814 B = 4431.234680 C = 4525.837949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.112 3.888 10 C 0.207 3.793 11 N -0.323 5.323 12 N -0.393 5.393 13 C 0.440 3.560 14 N -0.667 5.667 15 C 0.059 3.941 16 C -0.187 4.187 17 C -0.169 4.169 18 N -0.600 5.600 19 H 0.435 0.565 20 H 0.268 0.732 21 H 0.030 0.970 22 H 0.038 0.962 23 H 0.427 0.573 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -15.269 9.248 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.066 0.934 9 C 0.072 3.928 10 C -0.064 4.064 11 N -0.160 5.160 12 N -0.241 5.241 13 C 0.081 3.919 14 N -0.312 5.312 15 C -0.047 4.047 16 C -0.226 4.226 17 C -0.207 4.207 18 N -0.224 5.224 19 H 0.277 0.723 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.267 0.733 24 H 0.143 0.857 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.243 -14.905 8.003 17.441 hybrid contribution -0.523 0.445 1.145 1.335 sum 3.720 -14.460 9.148 17.510 Atomic orbital electron populations 1.70022 1.07148 1.28143 1.50949 1.25734 0.95802 1.02579 0.94407 0.85400 0.78580 0.78935 0.78137 1.19938 1.20097 1.19619 1.21207 0.92986 0.90837 1.51396 0.93363 1.17523 0.90543 0.86578 0.98127 1.25307 1.00104 0.92315 0.88710 1.73846 1.06774 1.10791 1.24583 1.74383 1.27303 1.07785 1.14654 1.21183 0.88300 0.89680 0.92746 1.42637 1.37680 1.21267 1.29611 1.21720 0.98233 0.98041 0.86723 1.23583 0.99302 1.03130 0.96626 1.23505 1.03805 0.90822 1.02588 1.43802 1.29101 1.21471 1.28035 0.72284 0.92264 0.95178 0.94336 0.73330 0.85728 0.88283 0.86634 0.86130 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.29 21.44 0.28 -53.12 15 2 C 0.01 0.78 5.46 84.65 0.46 1.24 15 3 Si 0.96 44.69 29.54 68.60 2.03 46.72 15 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 7 C -0.53 -30.27 9.07 25.60 0.23 -30.03 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.11 5.82 5.60 29.10 0.16 5.98 15 10 C 0.21 9.76 7.54 137.64 1.04 10.80 15 11 N -0.32 -16.54 12.15 -49.54 -0.60 -17.14 15 12 N -0.39 -17.70 12.23 -58.00 -0.71 -18.41 15 13 C 0.44 15.66 8.99 260.11 2.34 18.00 15 14 N -0.67 -16.18 5.72 -328.06 -1.88 -18.06 15 15 C 0.06 1.01 6.58 44.99 0.30 1.31 15 16 C -0.19 -2.38 10.46 30.60 0.32 -2.06 15 17 C -0.17 -1.92 10.46 30.60 0.32 -1.60 15 18 N -0.60 -21.61 6.09 -186.73 -1.14 -22.74 15 19 H 0.44 12.04 7.85 -92.71 -0.73 11.32 15 20 H 0.27 14.51 8.31 -92.70 -0.77 13.74 15 21 H 0.03 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.43 9.10 8.95 -92.71 -0.83 8.27 15 24 H 0.13 1.98 6.94 -2.39 -0.02 1.97 15 25 H 0.10 1.30 8.14 -2.39 -0.02 1.28 15 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 15 27 H 0.12 1.00 8.14 -2.39 -0.02 0.98 15 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 15 Total: -1.00 -70.65 253.13 2.79 -67.86 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -0.36 Total: 11.27 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.17 Total: 3.63 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -4.04 Total: -129.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.65 2.79 -67.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.002 kcal (2) G-P(sol) polarization free energy of solvation -70.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds