Wall clock time and date at job start Mon Mar 30 2020 02:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37457 * 119.99659 * 2 1 4 4 N 1.32310 * 126.24306 * 355.17331 * 3 2 1 5 5 N 1.28516 * 110.20654 * 179.97438 * 4 3 2 6 6 C 1.33062 * 109.70778 * 0.02562 * 5 4 3 7 7 C 1.39820 * 126.57452 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00035 * 186.27033 * 7 6 5 9 9 C 1.40120 * 120.00171 * 6.26581 * 7 6 5 10 10 N 1.30786 * 119.99810 * 6.34689 * 9 7 6 11 11 Si 1.86799 * 120.00176 * 186.34501 * 9 7 6 12 12 H 1.48499 * 109.46835 * 84.99406 * 11 9 7 13 13 H 1.48501 * 109.46844 * 204.99220 * 11 9 7 14 14 H 1.48499 * 109.47036 * 324.99305 * 11 9 7 15 15 N 1.36489 * 126.23936 * 174.86451 * 3 2 1 16 16 C 1.46504 * 127.14099 * 359.96665 * 15 3 2 17 17 C 1.53003 * 117.49805 * 312.59330 * 16 15 3 18 18 C 1.52998 * 117.49686 * 243.93734 * 16 15 3 19 19 H 1.09001 * 109.47182 * 60.00030 * 1 2 3 20 20 H 1.09001 * 109.47416 * 300.00037 * 1 2 3 21 21 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 22 22 H 0.96990 * 120.00261 * 180.02562 * 2 1 3 23 23 H 0.97003 * 120.00246 * 180.02562 * 10 9 7 24 24 H 1.08999 * 115.55293 * 98.26654 * 16 15 3 25 25 H 1.09000 * 117.49708 * 0.02562 * 17 16 15 26 26 H 1.08996 * 117.49709 * 145.01967 * 17 16 15 27 27 H 1.08999 * 117.50219 * 214.97676 * 18 16 15 28 28 H 1.09004 * 117.49933 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1522 1.1904 0.0000 4 7 1.6224 2.3995 -0.0898 5 7 2.5463 3.2924 -0.0594 6 6 3.7348 2.7046 0.0522 7 6 4.9772 3.3429 0.1160 8 1 5.8856 2.7589 0.1044 9 6 5.0437 4.7403 0.1949 10 7 3.9478 5.4403 0.3340 11 14 6.6977 5.6034 0.1016 12 1 7.0695 5.8082 -1.3215 13 1 6.6086 6.9193 0.7842 14 1 7.7298 4.7690 0.7678 15 7 3.5052 1.3411 0.0985 16 6 4.5066 0.2792 0.2249 17 6 4.2453 -0.8190 1.2577 18 6 5.3276 0.2323 1.5151 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.9500 -0.8399 -0.0004 23 1 3.9937 6.4077 0.3883 24 1 5.0061 -0.0085 -0.7002 25 1 3.3281 -0.7516 1.8428 26 1 4.5731 -1.8291 1.0121 27 1 6.3671 -0.0866 1.4389 28 1 5.1230 0.9918 2.2697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261208179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:15 Heat of formation + Delta-G solvation = 109.696980 kcal Electronic energy + Delta-G solvation = -13642.924161 eV Core-core repulsion = 11310.450667 eV Total energy + Delta-G solvation = -2332.473494 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.53634 -36.68184 -34.92314 -33.24984 -31.07387 -28.61717 -25.80894 -24.56491 -22.49276 -22.20393 -20.08073 -19.26578 -17.16693 -16.45200 -15.58264 -15.02083 -14.43102 -14.11661 -13.85191 -13.09438 -12.75560 -12.42134 -11.74851 -11.35922 -11.30830 -11.16705 -10.84451 -10.44355 -10.38291 -9.98674 -9.57517 -9.36897 -8.82407 -8.43428 -8.07797 -6.65305 -6.42464 -4.23004 3.08051 3.17233 3.19818 3.55157 3.76913 3.94322 4.09893 4.48663 4.72825 5.06523 5.13948 5.36883 5.60307 5.64996 5.74839 6.02537 6.10093 6.25343 6.30615 6.43107 6.74817 7.11413 7.30983 7.51794 7.68972 8.34514 8.52392 8.64256 9.01057 9.18845 10.52505 11.06357 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.011547 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.664381 B = 2424.240125 C = 3084.700437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.728 5.728 3 C 0.345 3.655 4 N -0.351 5.351 5 N -0.340 5.340 6 C 0.339 3.661 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.080 3.920 10 N -0.748 5.748 11 Si 0.914 3.086 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.265 1.265 15 N -0.519 5.519 16 C 0.087 3.913 17 C -0.188 4.188 18 C -0.163 4.163 19 H 0.046 0.954 20 H 0.044 0.956 21 H 0.058 0.942 22 H 0.392 0.608 23 H 0.275 0.725 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -10.436 1.186 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.374 5.374 3 C -0.010 4.010 4 N -0.197 5.197 5 N -0.182 5.182 6 C 0.092 3.908 7 C -0.491 4.491 8 H 0.097 0.903 9 C -0.143 4.143 10 N -0.374 5.374 11 Si 0.739 3.261 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.190 1.190 15 N -0.224 5.224 16 C -0.019 4.019 17 C -0.226 4.226 18 C -0.201 4.201 19 H 0.065 0.935 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.225 0.775 23 H 0.086 0.914 24 H 0.130 0.870 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.035 -8.961 1.081 9.085 hybrid contribution 2.004 -1.059 0.060 2.267 sum 3.038 -10.020 1.141 10.532 Atomic orbital electron populations 1.21111 0.79276 0.99887 1.01337 1.42220 1.04803 1.02415 1.87997 1.20587 0.80312 0.89986 1.10150 1.74502 1.26430 0.94075 1.24696 1.75425 0.94261 1.18498 1.30059 1.21241 0.96629 0.75433 0.97454 1.17941 0.89602 0.91277 1.50313 0.90270 1.25694 0.97777 0.97258 0.93610 1.69995 1.28104 1.07307 1.31953 0.86258 0.82042 0.78780 0.79062 1.19544 1.20353 1.18980 1.45585 1.03769 1.06947 1.66140 1.21306 0.95162 0.91407 0.94072 1.23296 1.01665 0.94567 1.03087 1.23181 0.96217 1.01083 0.99621 0.93514 0.93736 0.92291 0.77477 0.91425 0.87019 0.88433 0.88133 0.88104 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.04 11.02 59.85 0.66 2.70 15 2 N -0.73 -13.60 5.64 -68.39 -0.39 -13.99 15 3 C 0.34 8.45 8.44 -319.06 -2.69 5.75 15 4 N -0.35 -10.14 11.88 30.28 0.36 -9.78 15 5 N -0.34 -10.67 10.56 31.26 0.33 -10.34 15 6 C 0.34 9.74 7.50 -154.82 -1.16 8.58 15 7 C -0.45 -12.37 9.10 -38.28 -0.35 -12.71 15 8 H 0.08 2.00 7.76 -52.49 -0.41 1.59 15 9 C 0.08 2.14 5.49 -17.29 -0.09 2.04 15 10 N -0.75 -21.51 12.00 55.56 0.67 -20.85 15 11 Si 0.91 19.39 29.57 -169.99 -5.03 14.36 15 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 15 N -0.52 -12.58 3.14 -109.59 -0.34 -12.92 15 16 C 0.09 1.61 6.18 -67.93 -0.42 1.19 15 17 C -0.19 -2.69 9.11 -26.69 -0.24 -2.93 15 18 C -0.16 -2.62 10.46 -26.70 -0.28 -2.90 15 19 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.39 6.14 7.50 -40.82 -0.31 5.84 15 23 H 0.27 7.18 8.30 -40.82 -0.34 6.84 15 24 H 0.11 1.88 8.14 -51.93 -0.42 1.46 15 25 H 0.10 1.51 7.90 -51.93 -0.41 1.10 15 26 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.10 1.33 8.14 -51.93 -0.42 0.90 15 28 H 0.10 1.92 8.14 -51.93 -0.42 1.50 15 LS Contribution 249.87 15.07 3.77 3.77 Total: -1.00 -34.45 249.87 -8.43 -42.88 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.22 Total: 5.15 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -4.58 Total: 1.72 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: 0.63 Total: -67.88 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -34.45 -8.43 -42.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.579 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds