Wall clock time and date at job start Mon Mar 30 2020 02:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37457 * 119.99659 * 2 1 4 4 N 1.32310 * 126.24306 * 355.17331 * 3 2 1 5 5 N 1.28516 * 110.20654 * 179.97438 * 4 3 2 6 6 C 1.33062 * 109.70778 * 0.02562 * 5 4 3 7 7 C 1.39820 * 126.57452 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00035 * 186.27033 * 7 6 5 9 9 C 1.40120 * 120.00171 * 6.26581 * 7 6 5 10 10 N 1.30786 * 119.99810 * 6.34689 * 9 7 6 11 11 Si 1.86799 * 120.00176 * 186.34501 * 9 7 6 12 12 H 1.48499 * 109.46835 * 84.99406 * 11 9 7 13 13 H 1.48501 * 109.46844 * 204.99220 * 11 9 7 14 14 H 1.48499 * 109.47036 * 324.99305 * 11 9 7 15 15 N 1.36489 * 126.23936 * 174.86451 * 3 2 1 16 16 C 1.46504 * 127.14099 * 359.96665 * 15 3 2 17 17 C 1.53003 * 117.49805 * 312.59330 * 16 15 3 18 18 C 1.52998 * 117.49686 * 243.93734 * 16 15 3 19 19 H 1.09001 * 109.47182 * 60.00030 * 1 2 3 20 20 H 1.09001 * 109.47416 * 300.00037 * 1 2 3 21 21 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 22 22 H 0.96990 * 120.00261 * 180.02562 * 2 1 3 23 23 H 0.97003 * 120.00246 * 180.02562 * 10 9 7 24 24 H 1.08999 * 115.55293 * 98.26654 * 16 15 3 25 25 H 1.09000 * 117.49708 * 0.02562 * 17 16 15 26 26 H 1.08996 * 117.49709 * 145.01967 * 17 16 15 27 27 H 1.08999 * 117.50219 * 214.97676 * 18 16 15 28 28 H 1.09004 * 117.49933 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1522 1.1904 0.0000 4 7 1.6224 2.3995 -0.0898 5 7 2.5463 3.2924 -0.0594 6 6 3.7348 2.7046 0.0522 7 6 4.9772 3.3429 0.1160 8 1 5.8856 2.7589 0.1044 9 6 5.0437 4.7403 0.1949 10 7 3.9478 5.4403 0.3340 11 14 6.6977 5.6034 0.1016 12 1 7.0695 5.8082 -1.3215 13 1 6.6086 6.9193 0.7842 14 1 7.7298 4.7690 0.7678 15 7 3.5052 1.3411 0.0985 16 6 4.5066 0.2792 0.2249 17 6 4.2453 -0.8190 1.2577 18 6 5.3276 0.2323 1.5151 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.9500 -0.8399 -0.0004 23 1 3.9937 6.4077 0.3883 24 1 5.0061 -0.0085 -0.7002 25 1 3.3281 -0.7516 1.8428 26 1 4.5731 -1.8291 1.0121 27 1 6.3671 -0.0866 1.4389 28 1 5.1230 0.9918 2.2697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:15 Heat of formation + Delta-G solvation = 87.348620 kcal Electronic energy + Delta-G solvation = -13643.893258 eV Core-core repulsion = 11310.450667 eV Total energy + Delta-G solvation = -2333.442592 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.47116 -38.12474 -36.57858 -35.21487 -32.90189 -30.57462 -27.53843 -26.39354 -24.13031 -23.45606 -21.98440 -21.03804 -18.97894 -18.17307 -17.24328 -16.72431 -16.16555 -15.75487 -15.39933 -14.78707 -14.33081 -13.98599 -13.20567 -12.99762 -12.86976 -12.72248 -12.49107 -11.99787 -11.87612 -11.46734 -11.40877 -11.37636 -10.69319 -10.25157 -10.09983 -8.56501 -8.40167 -6.32396 1.38460 1.43817 1.59515 1.84205 1.92228 2.31587 2.63608 2.70176 2.99897 3.50198 3.76184 3.88299 4.08539 4.50728 4.65075 4.75400 4.78499 4.96978 4.99492 5.02943 5.12573 5.17531 5.44760 5.63479 5.79738 6.39644 6.71860 6.90804 6.98797 7.31684 8.58052 9.02279 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.011547 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.664381 B = 2424.240125 C = 3084.700437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.711 5.711 3 C 0.366 3.634 4 N -0.410 5.410 5 N -0.397 5.397 6 C 0.311 3.689 7 C -0.473 4.473 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.802 5.802 11 Si 1.001 2.999 12 H -0.265 1.265 13 H -0.274 1.274 14 H -0.247 1.247 15 N -0.520 5.520 16 C 0.044 3.956 17 C -0.148 4.148 18 C -0.162 4.162 19 H 0.032 0.968 20 H 0.031 0.969 21 H 0.116 0.884 22 H 0.411 0.589 23 H 0.279 0.721 24 H 0.129 0.871 25 H 0.085 0.915 26 H 0.150 0.850 27 H 0.136 0.864 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 -13.038 1.348 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.359 5.359 3 C 0.008 3.992 4 N -0.256 5.256 5 N -0.239 5.239 6 C 0.062 3.938 7 C -0.513 4.513 8 H 0.113 0.887 9 C -0.191 4.191 10 N -0.429 5.429 11 Si 0.821 3.179 12 H -0.189 1.189 13 H -0.199 1.199 14 H -0.171 1.171 15 N -0.225 5.225 16 C -0.061 4.061 17 C -0.185 4.185 18 C -0.199 4.199 19 H 0.051 0.949 20 H 0.050 0.950 21 H 0.134 0.866 22 H 0.247 0.753 23 H 0.089 0.911 24 H 0.147 0.853 25 H 0.104 0.896 26 H 0.168 0.832 27 H 0.154 0.846 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.810 -11.641 1.249 12.040 hybrid contribution 1.351 -0.437 0.025 1.420 sum 4.161 -12.078 1.274 12.838 Atomic orbital electron populations 1.21345 0.77351 1.03182 1.00029 1.42440 1.05925 1.01101 1.86437 1.21043 0.81003 0.90874 1.06286 1.74326 1.27051 0.95664 1.28588 1.75265 0.95767 1.20747 1.32101 1.21612 0.96584 0.77571 0.98033 1.18393 0.89781 0.92260 1.50893 0.88691 1.26890 1.02275 0.97745 0.92183 1.70163 1.31337 1.07791 1.33584 0.84958 0.76313 0.77386 0.79287 1.18939 1.19856 1.17057 1.45741 1.04593 1.06957 1.65205 1.21847 0.95902 0.92174 0.96161 1.23426 1.00284 0.95645 0.99159 1.23229 0.98629 1.01152 0.96937 0.94903 0.95030 0.86594 0.75279 0.91123 0.85328 0.89599 0.83187 0.84587 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.72 11.02 127.77 1.41 5.12 15 2 N -0.71 -25.26 5.64 -370.29 -2.09 -27.34 15 3 C 0.37 18.04 8.44 260.18 2.20 20.23 15 4 N -0.41 -24.67 11.88 -58.10 -0.69 -25.36 15 5 N -0.40 -26.18 10.56 -55.01 -0.58 -26.76 15 6 C 0.31 18.50 7.50 133.25 1.00 19.50 15 7 C -0.47 -26.48 9.10 23.11 0.21 -26.27 15 8 H 0.10 4.79 7.76 -2.91 -0.02 4.76 15 9 C 0.03 1.50 5.49 85.31 0.47 1.97 15 10 N -0.80 -48.11 12.00 21.86 0.26 -47.85 15 11 Si 1.00 39.99 29.57 68.60 2.03 42.02 15 12 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 13 H -0.27 -10.59 7.11 99.48 0.71 -9.89 15 14 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 15 N -0.52 -25.34 3.14 -500.63 -1.57 -26.91 15 16 C 0.04 1.52 6.18 44.99 0.28 1.80 15 17 C -0.15 -3.63 9.11 30.62 0.28 -3.35 15 18 C -0.16 -4.80 10.46 30.62 0.32 -4.48 15 19 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.03 1.02 8.14 -2.39 -0.02 1.00 15 21 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.41 11.45 7.50 -92.72 -0.70 10.76 15 23 H 0.28 15.20 8.30 -92.71 -0.77 14.43 15 24 H 0.13 3.99 8.14 -2.39 -0.02 3.97 15 25 H 0.09 2.36 7.90 -2.39 -0.02 2.34 15 26 H 0.15 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.14 3.04 8.14 -2.39 -0.02 3.02 15 28 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 Total: -1.00 -81.17 249.87 4.00 -77.17 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.48 Total: 20.50 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.16 Total: 14.53 kcal Atomic # 7 Polarization: -149.55 SS G_CDS: -4.67 Total: -154.22 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -81.17 4.00 -77.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.523 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds