Wall clock time and date at job start Mon Mar 30 2020 02:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 O 1.42898 * 109.47202 * 119.99902 * 2 1 3 5 5 C 1.35457 * 116.99526 * 149.99572 * 4 2 1 6 6 N 1.32576 * 119.05261 * 0.02562 * 5 4 2 7 7 C 1.32367 * 121.23342 * 179.97438 * 6 5 4 8 8 C 1.38353 * 119.32361 * 0.02562 * 7 6 5 9 9 C 1.40888 * 118.27491 * 359.97438 * 8 7 6 10 10 C 1.41539 * 120.62886 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99985 * 6.34854 * 10 9 8 12 12 C 1.40105 * 120.00109 * 186.34180 * 10 9 8 13 13 N 1.30674 * 120.00162 * 176.27975 * 12 10 9 14 14 Si 1.86804 * 119.99797 * 356.00063 * 12 10 9 15 15 H 1.48501 * 109.46722 * 180.27465 * 14 12 10 16 16 H 1.48491 * 109.47189 * 300.27740 * 14 12 10 17 17 H 1.48501 * 109.46657 * 60.27880 * 14 12 10 18 18 N 1.31911 * 119.04572 * 180.25706 * 5 4 2 19 19 H 1.09009 * 109.47165 * 299.99937 * 1 2 3 20 20 H 1.09005 * 109.47527 * 59.99632 * 1 2 3 21 21 H 1.08994 * 109.47393 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47022 * 240.00579 * 2 1 3 23 23 H 1.08999 * 109.46802 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47347 * 300.00041 * 3 2 1 25 25 H 1.08998 * 109.46748 * 60.00411 * 3 2 1 26 26 H 1.07998 * 120.33845 * 180.02562 * 7 6 5 27 27 H 1.08008 * 120.86373 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99909 * 354.99492 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1968 -1.3119 1.0653 6 7 3.8481 -1.2800 -0.0890 7 6 5.0144 -1.8883 -0.2361 8 6 5.5628 -2.5704 0.8356 9 6 4.8497 -2.5884 2.0506 10 6 5.3642 -3.2714 3.1785 11 1 6.3560 -3.6976 3.1457 12 6 4.5868 -3.3945 4.3376 13 7 5.0320 -4.0869 5.3524 14 14 2.9172 -2.5624 4.4351 15 1 2.3032 -2.8385 5.7587 16 1 3.0837 -1.0970 4.2626 17 1 2.0375 -3.0905 3.3615 18 7 3.6723 -1.9513 2.1165 19 1 -0.3634 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 5.5328 -1.8527 -1.1829 27 1 6.5128 -3.0758 0.7431 28 1 5.8668 -4.5753 5.2775 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216870.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:48 Heat of formation + Delta-G solvation = -38.290353 kcal Electronic energy + Delta-G solvation = -13541.411032 eV Core-core repulsion = 11170.227574 eV Total energy + Delta-G solvation = -2371.183457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.58176 -39.38699 -36.16925 -34.35737 -33.87281 -31.71960 -28.39468 -28.09194 -24.68830 -24.09474 -21.99060 -20.59761 -19.28709 -18.06198 -16.84279 -16.53009 -16.03328 -15.54416 -15.38003 -14.88360 -14.44793 -14.16325 -13.93380 -13.33394 -13.16863 -13.04344 -12.77354 -12.49481 -11.90995 -11.82843 -11.74385 -11.42537 -11.16637 -11.02405 -9.75215 -9.70340 -9.22031 -7.13503 0.57365 0.61131 1.54871 1.68389 1.81452 2.08300 2.46852 2.60168 3.45680 3.54708 3.96698 4.08042 4.22356 4.28833 4.37103 4.69244 4.71864 4.85356 4.89116 4.95877 5.02196 5.20054 5.25825 5.29476 5.41405 5.79330 5.93444 6.37267 6.41554 6.72797 7.64919 7.82860 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.036518 B = 0.012279 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.568477 B = 2279.680178 C = 2897.414169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 C -0.158 4.158 4 O -0.320 6.320 5 C 0.509 3.491 6 N -0.647 5.647 7 C 0.179 3.821 8 C -0.348 4.348 9 C 0.268 3.732 10 C -0.480 4.480 11 H 0.088 0.912 12 C 0.027 3.973 13 N -0.806 5.806 14 Si 1.185 2.815 15 H -0.322 1.322 16 H -0.299 1.299 17 H -0.300 1.300 18 N -0.639 5.639 19 H 0.065 0.935 20 H 0.110 0.890 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.191 0.809 27 H 0.137 0.863 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 6.464 -9.835 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.018 3.982 3 C -0.215 4.215 4 O -0.224 6.224 5 C 0.204 3.796 6 N -0.384 5.384 7 C 0.024 3.976 8 C -0.373 4.373 9 C 0.141 3.859 10 C -0.515 4.515 11 H 0.106 0.894 12 C -0.194 4.194 13 N -0.428 5.428 14 Si 1.021 2.979 15 H -0.255 1.255 16 H -0.228 1.228 17 H -0.229 1.229 18 N -0.379 5.379 19 H 0.084 0.916 20 H 0.128 0.872 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.058 0.942 24 H 0.120 0.880 25 H 0.078 0.922 26 H 0.207 0.793 27 H 0.154 0.846 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.049 7.180 -8.580 13.223 hybrid contribution 2.669 -1.010 -0.925 3.000 sum -4.380 6.170 -9.505 12.149 Atomic orbital electron populations 1.21926 0.90607 1.03028 1.04367 1.22717 0.95908 0.92999 0.86601 1.22152 1.00798 0.94923 1.03666 1.86044 1.30935 1.64562 1.40861 1.20580 0.85972 0.86996 0.86007 1.67915 1.13782 1.32719 1.23978 1.22893 0.88735 0.87443 0.98487 1.22438 1.05620 1.13825 0.95446 1.18900 0.85890 0.87081 0.93999 1.20925 1.03029 1.29766 0.97776 0.89352 1.28241 1.07214 0.93628 0.90318 1.70617 1.21549 1.19734 1.30900 0.81297 0.70000 0.75522 0.71076 1.25500 1.22754 1.22873 1.66343 1.18422 1.22646 1.30467 0.91581 0.87153 0.92623 0.89786 0.94241 0.87976 0.92215 0.79252 0.84559 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.56 71.98 0.69 -2.70 15 2 C 0.07 2.36 3.09 30.60 0.09 2.46 15 3 C -0.16 -4.32 9.53 71.98 0.69 -3.63 15 4 O -0.32 -14.22 9.84 -87.55 -0.86 -15.08 15 5 C 0.51 24.92 8.45 180.61 1.53 26.44 15 6 N -0.65 -27.95 8.63 -313.60 -2.71 -30.65 15 7 C 0.18 7.03 11.29 84.64 0.96 7.99 15 8 C -0.35 -15.49 9.94 22.95 0.23 -15.27 15 9 C 0.27 14.17 6.44 40.27 0.26 14.43 15 10 C -0.48 -26.23 9.63 23.54 0.23 -26.00 15 11 H 0.09 4.70 8.06 -2.91 -0.02 4.68 15 12 C 0.03 1.50 5.52 85.32 0.47 1.97 15 13 N -0.81 -43.63 13.65 21.85 0.30 -43.33 15 14 Si 1.19 61.47 25.48 68.60 1.75 63.22 15 15 H -0.32 -15.91 7.11 99.48 0.71 -15.20 15 16 H -0.30 -16.04 6.98 99.48 0.69 -15.35 15 17 H -0.30 -16.08 6.92 99.48 0.69 -15.39 15 18 N -0.64 -34.72 4.78 -307.16 -1.47 -36.19 15 19 H 0.07 1.54 8.14 -2.38 -0.02 1.52 15 20 H 0.11 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.08 2.76 6.95 -2.39 -0.02 2.74 15 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 15 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.19 5.43 8.06 -2.91 -0.02 5.41 15 27 H 0.14 5.40 8.06 -2.91 -0.02 5.38 15 28 H 0.29 14.83 8.72 -92.71 -0.81 14.02 15 Total: -1.00 -63.80 245.53 3.22 -60.58 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: 1.08 Total: -4.24 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.14 Total: 5.69 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -3.88 Total: -110.18 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.86 Total: -15.08 kcal Atomic # 14 Polarization: 61.47 SS G_CDS: 1.75 Total: 63.22 kcal Total: -63.80 3.22 -60.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216870.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.291 kcal (2) G-P(sol) polarization free energy of solvation -63.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds