Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.71826 * 305.62544 * 10 9 7 12 12 C 1.53476 * 109.72868 * 184.99982 * 10 9 7 13 13 C 1.53152 * 109.18115 * 191.93169 * 12 10 9 14 14 C 1.53261 * 109.57813 * 69.19793 * 13 12 10 15 15 N 1.46469 * 108.81392 * 309.53503 * 14 13 12 16 16 N 1.28426 * 128.29717 * 197.32253 * 15 14 13 17 17 N 1.29002 * 108.66855 * 179.97438 * 16 15 14 18 18 N 1.29137 * 109.46220 * 359.97175 * 17 16 15 19 19 C 1.30305 * 107.74257 * 0.04213 * 18 17 16 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.09001 * 109.51933 * 311.84839 * 12 10 9 24 24 H 1.09006 * 109.51809 * 71.95996 * 12 10 9 25 25 H 1.08996 * 109.45396 * 189.22687 * 13 12 10 26 26 H 1.08997 * 109.45423 * 309.18911 * 13 12 10 27 27 H 1.09000 * 109.58419 * 69.33629 * 14 13 12 28 28 H 1.09003 * 109.58132 * 189.73781 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 2.9380 -3.5535 -0.8332 12 6 1.4880 -4.9911 -0.1233 13 6 2.4476 -6.1469 0.1748 14 6 2.8205 -6.1345 1.6613 15 7 3.2575 -4.7853 2.0273 16 7 3.9271 -4.4183 3.0599 17 7 4.1043 -3.1417 3.0049 18 7 3.5502 -2.6761 1.9354 19 6 3.0102 -3.6773 1.2998 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 0.6637 -5.0088 0.5897 24 1 1.0963 -5.0935 -1.1354 25 1 1.9640 -7.0925 -0.0702 26 1 3.3497 -6.0340 -0.4264 27 1 1.9517 -6.4116 2.2583 28 1 3.6302 -6.8419 1.8407 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = 100.276738 kcal Electronic energy + Delta-G solvation = -13788.835242 eV Core-core repulsion = 11455.953256 eV Total energy + Delta-G solvation = -2332.881986 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.68812 -37.61989 -34.97965 -32.83153 -31.15573 -30.52820 -27.03723 -24.20473 -23.32875 -22.89241 -21.49401 -19.68162 -17.15595 -16.76603 -16.42224 -15.26826 -14.50189 -14.18549 -13.65024 -13.31645 -12.78443 -12.59236 -12.16367 -11.56734 -11.37619 -11.30398 -10.97795 -10.78337 -10.48856 -10.36136 -10.25821 -10.08012 -9.89157 -9.21726 -8.47777 -8.23193 -6.24659 -3.91797 1.80351 2.41518 2.97163 3.54064 3.62295 3.78493 4.21698 4.49015 4.59109 4.63689 4.71165 5.02233 5.20810 5.30713 5.47471 5.52746 5.65189 5.76034 5.99378 6.05530 6.26335 6.37568 6.41303 6.75739 7.18548 7.30816 8.22475 8.63591 8.99474 9.27984 9.76677 11.15955 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.040258 B = 0.010964 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.352575 B = 2553.148968 C = 3066.706971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 1.068 2.932 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.581 4.581 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.000 4.000 11 H 0.098 0.902 12 C -0.128 4.128 13 C -0.138 4.138 14 C 0.118 3.882 15 N -0.322 5.322 16 N -0.119 5.119 17 N -0.096 5.096 18 N -0.259 5.259 19 C 0.213 3.787 20 H 0.264 0.736 21 H 0.009 0.991 22 H 0.023 0.977 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -14.356 -1.238 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.897 3.103 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.619 4.619 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.021 4.021 11 H 0.116 0.884 12 C -0.166 4.166 13 C -0.176 4.176 14 C -0.004 4.004 15 N -0.126 5.126 16 N -0.104 5.104 17 N -0.090 5.090 18 N -0.105 5.105 19 C -0.065 4.065 20 H 0.075 0.925 21 H 0.027 0.973 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.793 -12.119 -0.113 12.699 hybrid contribution -0.320 -2.299 -0.483 2.371 sum 3.474 -14.418 -0.597 14.842 Atomic orbital electron populations 1.70800 1.06966 1.30166 1.47883 1.25741 0.96380 1.02691 0.93854 0.83556 0.75199 0.75124 0.76456 1.21735 1.21012 1.21287 1.22010 0.94922 0.90934 1.54055 0.92014 1.19268 0.93390 0.92193 0.96765 1.20207 0.96839 0.96937 0.88159 0.88409 1.21926 0.98046 0.92937 1.03724 1.22028 1.01508 1.01090 0.92981 1.22183 1.01722 0.78546 0.97923 1.48553 1.37208 1.10905 1.15969 1.78560 1.12824 1.10938 1.08055 1.78827 1.17198 0.98943 1.14068 1.75214 1.10673 1.23360 1.01264 1.26203 0.99949 0.81409 0.98912 0.92545 0.97295 0.95882 0.91077 0.89434 0.88530 0.90316 0.88442 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.34 13.65 55.43 0.76 -27.58 15 2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 15 3 Si 1.07 26.58 29.90 -169.99 -5.08 21.50 15 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 7 C -0.58 -16.29 7.97 -34.44 -0.27 -16.56 15 8 H 0.06 1.77 7.04 -52.49 -0.37 1.40 15 9 C 0.02 0.52 3.74 -27.89 -0.10 0.41 15 10 C 0.00 0.01 2.53 -91.53 -0.23 -0.23 15 11 H 0.10 1.78 8.14 -51.93 -0.42 1.35 15 12 C -0.13 -1.66 5.30 -26.41 -0.14 -1.80 15 13 C -0.14 -1.28 5.93 -26.52 -0.16 -1.44 15 14 C 0.12 1.27 7.24 -3.92 -0.03 1.24 15 15 N -0.32 -5.54 3.76 -58.34 -0.22 -5.76 15 16 N -0.12 -2.34 13.35 60.35 0.81 -1.54 15 17 N -0.10 -2.22 13.44 60.33 0.81 -1.41 15 18 N -0.26 -6.30 10.63 32.58 0.35 -5.95 15 19 C 0.21 4.37 7.04 -156.10 -1.10 3.27 15 20 H 0.26 7.99 7.22 -40.82 -0.29 7.70 15 21 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 15 22 H 0.02 0.56 8.01 -51.93 -0.42 0.14 15 23 H 0.07 0.95 8.09 -51.93 -0.42 0.53 15 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.08 0.73 8.12 -51.93 -0.42 0.31 15 27 H 0.10 0.89 8.14 -51.93 -0.42 0.46 15 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 15 LS Contribution 238.44 15.07 3.59 3.59 Total: -1.00 -34.42 238.44 -4.37 -38.78 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: -3.25 Total: -6.90 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.13 Total: -14.74 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 2.50 Total: -42.24 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -5.08 Total: 21.50 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -34.42 -4.37 -38.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.061 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds