Wall clock time and date at job start Mon Mar 30 2020 02:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.38355 * 127.14508 * 2 1 4 4 C 1.39818 * 126.57000 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00452 * 0.33470 * 4 3 2 6 6 C 1.40123 * 120.00060 * 180.33475 * 4 3 2 7 7 N 1.30796 * 119.99964 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00180 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47187 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46994 * 120.00269 * 8 6 4 11 11 H 1.48500 * 109.47021 * 239.99849 * 8 6 4 12 12 N 1.33055 * 106.85578 * 180.25707 * 3 2 1 13 13 N 1.28519 * 109.71002 * 359.73767 * 12 3 2 14 14 C 1.32322 * 110.20180 * 0.02562 * 13 12 3 15 15 N 1.37445 * 126.23779 * 179.97438 * 14 13 12 16 16 C 1.46501 * 120.00389 * 0.02562 * 15 14 13 17 17 C 1.53001 * 117.51946 * 136.28314 * 16 15 14 18 18 C 1.52999 * 60.00190 * 107.47992 * 17 16 15 19 19 H 1.08997 * 109.47645 * 270.17762 * 1 2 3 20 20 H 1.09002 * 109.47074 * 30.17913 * 1 2 3 21 21 H 1.08999 * 109.47195 * 150.17972 * 1 2 3 22 22 H 0.97001 * 120.00194 * 180.02562 * 7 6 4 23 23 H 0.97003 * 120.00029 * 180.02562 * 15 14 13 24 24 H 1.09002 * 115.54982 * 350.58110 * 16 15 14 25 25 H 1.09001 * 117.49733 * 214.97423 * 17 16 15 26 26 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 27 27 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 28 28 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3004 1.1028 0.0000 4 6 1.9083 2.4449 -0.0005 5 1 0.8591 2.7011 0.0045 6 6 2.8766 3.4577 -0.0075 7 7 4.1473 3.1476 -0.0141 8 14 2.3528 5.2508 -0.0075 9 1 0.8702 5.3334 0.0013 10 1 2.8928 5.9241 1.2009 11 1 2.8793 5.9203 -1.2240 12 7 3.5483 0.6415 -0.0057 13 7 3.5354 -0.6437 -0.0036 14 6 2.2890 -1.0880 0.0030 15 7 1.8960 -2.4051 0.0064 16 6 2.9023 -3.4699 0.0033 17 6 2.6792 -4.6561 0.9436 18 6 2.4903 -4.8295 -0.5647 19 1 -0.3634 0.0032 1.0276 20 1 -0.3633 0.8884 -0.5166 21 1 -0.3633 -0.8916 -0.5110 22 1 4.8176 3.8487 -0.0186 23 1 0.9523 -2.6297 0.0109 24 1 3.9295 -3.1454 -0.1626 25 1 3.5597 -5.1119 1.3963 26 1 1.7838 -4.6442 1.5651 27 1 1.4705 -4.9318 -0.9358 28 1 3.2467 -5.3995 -1.1044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222968.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:54 Heat of formation + Delta-G solvation = 86.485464 kcal Electronic energy + Delta-G solvation = -13278.792369 eV Core-core repulsion = 10945.312349 eV Total energy + Delta-G solvation = -2333.480021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.43130 -38.63649 -35.52443 -35.19380 -33.81013 -30.19329 -27.79829 -26.91555 -23.46931 -23.18211 -22.03311 -21.30307 -19.02582 -18.08772 -17.12234 -16.77699 -16.50517 -15.78359 -15.25197 -14.83726 -13.97439 -13.70809 -13.48990 -13.08581 -13.05292 -12.68643 -12.63849 -12.34097 -11.89658 -11.48616 -11.31706 -11.26245 -10.46582 -10.23295 -10.17010 -8.50750 -8.39572 -6.34779 1.37309 1.44819 1.62057 1.79725 1.86490 2.30650 2.66584 2.94660 3.12396 3.49499 3.90016 4.09094 4.17244 4.20975 4.49869 4.65594 4.76378 4.80064 4.99719 5.05176 5.12857 5.27634 5.46641 5.59159 5.82653 6.36489 6.68664 6.82455 6.95502 7.26342 8.57914 9.00726 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.070232 B = 0.007747 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.584310 B = 3613.276192 C = 3928.369029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.550 5.550 3 C 0.303 3.697 4 C -0.478 4.478 5 H 0.098 0.902 6 C 0.026 3.974 7 N -0.799 5.799 8 Si 1.004 2.996 9 H -0.246 1.246 10 H -0.270 1.270 11 H -0.270 1.270 12 N -0.391 5.391 13 N -0.405 5.405 14 C 0.365 3.635 15 N -0.674 5.674 16 C 0.087 3.913 17 C -0.190 4.190 18 C -0.171 4.171 19 H 0.070 0.930 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.279 0.721 23 H 0.408 0.592 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 -8.361 -0.019 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.255 5.255 3 C 0.054 3.946 4 C -0.519 4.519 5 H 0.116 0.884 6 C -0.192 4.192 7 N -0.425 5.425 8 Si 0.823 3.177 9 H -0.169 1.169 10 H -0.195 1.195 11 H -0.195 1.195 12 N -0.233 5.233 13 N -0.251 5.251 14 C 0.007 3.993 15 N -0.319 5.319 16 C -0.020 4.020 17 C -0.229 4.229 18 C -0.210 4.210 19 H 0.089 0.911 20 H 0.102 0.898 21 H 0.112 0.888 22 H 0.089 0.911 23 H 0.245 0.755 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.484 -8.376 -0.038 11.233 hybrid contribution -1.624 0.626 0.056 1.741 sum -9.108 -7.750 0.018 11.959 Atomic orbital electron populations 1.21809 0.75587 1.04465 1.03045 1.46223 1.08022 1.05088 1.66178 1.21667 0.85174 0.89262 0.98511 1.18505 0.95519 0.86555 1.51275 0.88386 1.26904 0.93968 1.06101 0.92267 1.70194 1.02295 1.36319 1.33714 0.84853 0.79938 0.74440 0.78428 1.16921 1.19524 1.19481 1.75296 1.17263 0.98911 1.31816 1.74322 1.15743 1.06883 1.28162 1.20841 0.88120 0.83366 1.06947 1.41812 1.07686 0.97303 1.85108 1.21288 0.92535 0.82116 1.06068 1.23521 1.04330 1.01640 0.93420 1.23478 1.03955 0.97459 0.96101 0.91117 0.89761 0.88794 0.91078 0.75463 0.87923 0.87451 0.88091 0.87386 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.87 127.77 1.39 4.47 15 2 N -0.55 -26.39 3.25 -546.55 -1.78 -28.17 15 3 C 0.30 17.83 7.53 133.25 1.00 18.84 15 4 C -0.48 -26.43 9.05 23.11 0.21 -26.22 15 5 H 0.10 4.80 7.31 -2.91 -0.02 4.78 15 6 C 0.03 1.42 5.50 85.30 0.47 1.89 15 7 N -0.80 -47.38 11.94 21.86 0.26 -47.12 15 8 Si 1.00 39.41 29.56 68.60 2.03 41.44 15 9 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 10 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 11 H -0.27 -10.28 7.11 99.48 0.71 -9.58 15 12 N -0.39 -25.47 10.48 -55.01 -0.58 -26.05 15 13 N -0.41 -24.04 11.55 -58.10 -0.67 -24.71 15 14 C 0.36 17.80 8.60 260.18 2.24 20.04 15 15 N -0.67 -24.13 5.68 -328.19 -1.86 -26.00 15 16 C 0.09 2.75 6.55 44.99 0.29 3.05 15 17 C -0.19 -4.35 10.46 30.59 0.32 -4.03 15 18 C -0.17 -3.65 10.45 30.60 0.32 -3.33 15 19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 20 H 0.08 2.68 7.54 -2.39 -0.02 2.66 15 21 H 0.09 2.37 7.62 -2.39 -0.02 2.35 15 22 H 0.28 14.98 8.30 -92.71 -0.77 14.21 15 23 H 0.41 11.51 8.22 -92.71 -0.76 10.75 15 24 H 0.10 3.92 7.64 -2.39 -0.02 3.90 15 25 H 0.11 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 27 H 0.11 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.11 2.10 8.14 -2.38 -0.02 2.08 15 Total: -1.00 -78.25 250.13 4.06 -74.19 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.42 Total: 21.73 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 6.24 Total: 14.69 kcal Atomic # 7 Polarization: -147.41 SS G_CDS: -4.63 Total: -152.04 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -78.25 4.06 -74.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222968.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.672 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds