Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47344 * 2 1 4 4 O 1.42900 * 109.47425 * 240.00025 * 2 1 3 5 5 C 1.35316 * 116.99954 * 270.00286 * 4 2 1 6 6 N 1.32586 * 118.88889 * 359.73189 * 5 4 2 7 7 C 1.31844 * 121.02589 * 179.71518 * 6 5 4 8 8 C 1.41147 * 118.84687 * 0.53961 * 7 6 5 9 9 C 1.41318 * 120.98327 * 179.70819 * 8 7 6 10 10 H 1.07995 * 119.99634 * 203.21497 * 9 8 7 11 11 C 1.39895 * 120.00005 * 23.22263 * 9 8 7 12 12 N 1.30876 * 120.00152 * 17.35005 * 11 9 8 13 13 Si 1.86797 * 119.99756 * 197.35930 * 11 9 8 14 14 H 1.48502 * 109.47379 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47367 * 119.99337 * 13 11 9 16 16 H 1.48504 * 109.47225 * 239.99278 * 13 11 9 17 17 C 1.41139 * 118.02659 * 359.73594 * 8 7 6 18 18 N 1.31845 * 118.85224 * 359.97438 * 17 8 7 19 19 H 1.08997 * 109.47240 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47119 * 300.00628 * 1 2 3 21 21 H 1.09005 * 109.46615 * 59.99626 * 1 2 3 22 22 H 1.09002 * 109.47133 * 119.99832 * 2 1 3 23 23 H 1.09003 * 109.46683 * 59.99662 * 3 2 1 24 24 H 1.09002 * 109.46768 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47040 * 300.00324 * 3 2 1 26 26 H 1.08002 * 120.57426 * 180.25477 * 7 6 5 27 27 H 0.96998 * 119.99798 * 180.02562 * 12 11 9 28 28 H 1.08003 * 120.57626 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2112 -2.0074 -1.0655 6 7 1.9683 -2.6066 0.0920 7 6 2.1480 -3.9048 0.2360 8 6 2.6173 -4.6535 -0.8647 9 6 2.8316 -6.0464 -0.7587 10 1 3.5162 -6.5401 -1.4324 11 6 2.1569 -6.7855 0.2187 12 7 1.0972 -6.2856 0.8019 13 14 2.7685 -8.4860 0.6916 14 1 3.9746 -8.8185 -0.1083 15 1 3.1117 -8.5046 2.1363 16 1 1.7051 -9.4871 0.4226 17 6 2.8668 -3.9698 -2.0739 18 7 2.6524 -2.6699 -2.1257 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.9440 -4.3862 1.1810 27 1 0.6296 -6.7980 1.4798 28 1 3.2271 -4.5021 -2.9418 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231922.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = -27.323252 kcal Electronic energy + Delta-G solvation = -13282.035621 eV Core-core repulsion = 10911.327733 eV Total energy + Delta-G solvation = -2370.707888 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.35893 -39.17015 -36.02702 -34.12018 -33.85572 -31.81781 -28.16430 -27.39383 -25.03755 -23.95555 -22.03669 -19.52213 -19.36715 -18.09079 -16.87089 -16.60704 -15.80393 -15.42471 -15.20671 -14.65918 -14.02579 -13.92341 -13.66202 -13.22636 -13.19743 -13.02896 -12.89073 -12.67146 -12.19781 -11.80602 -11.63535 -11.48284 -11.34719 -11.08780 -9.75997 -9.50711 -8.79490 -6.44516 0.63468 0.72764 1.43801 1.52339 1.60420 2.12624 2.20119 2.66368 3.57147 3.76027 3.99944 4.11658 4.22499 4.34036 4.42042 4.71013 4.84964 4.87789 4.88845 4.94650 5.12842 5.21599 5.30589 5.49577 5.60109 6.19390 6.24130 6.45353 6.66962 6.96181 7.74409 8.18169 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.061244 B = 0.007887 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.078360 B = 3549.341927 C = 3827.747858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.078 3.922 3 C -0.137 4.137 4 O -0.318 6.318 5 C 0.331 3.669 6 N -0.545 5.545 7 C 0.085 3.915 8 C -0.031 4.031 9 C -0.456 4.456 10 H 0.099 0.901 11 C 0.035 3.965 12 N -0.819 5.819 13 Si 0.995 3.005 14 H -0.252 1.252 15 H -0.264 1.264 16 H -0.266 1.266 17 C 0.034 3.966 18 N -0.519 5.519 19 H 0.028 0.972 20 H 0.096 0.904 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.104 0.896 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.159 0.841 27 H 0.297 0.703 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 3.271 2.739 4.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.194 4.194 4 O -0.224 6.224 5 C 0.032 3.968 6 N -0.271 5.271 7 C -0.085 4.085 8 C -0.037 4.037 9 C -0.485 4.485 10 H 0.117 0.883 11 C -0.182 4.182 12 N -0.444 5.444 13 Si 0.815 3.185 14 H -0.175 1.175 15 H -0.188 1.188 16 H -0.191 1.191 17 C -0.134 4.134 18 N -0.242 5.242 19 H 0.047 0.953 20 H 0.115 0.885 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.122 0.878 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.176 0.824 27 H 0.109 0.891 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.071 4.515 2.619 5.220 hybrid contribution 0.032 -1.679 0.389 1.724 sum -0.039 2.836 3.008 4.134 Atomic orbital electron populations 1.22140 0.94675 1.01193 1.03507 1.22480 0.94870 0.93602 0.86964 1.21862 1.01506 0.91822 1.04163 1.85858 1.82446 1.14656 1.39479 1.20164 1.03214 0.86139 0.87323 1.67445 1.20382 1.13948 1.25352 1.23213 0.99574 0.86336 0.99401 1.19451 0.94693 0.96738 0.92845 1.19786 1.22179 0.91462 1.15120 0.88346 1.26943 0.92564 1.05106 0.93579 1.69781 1.13404 1.40907 1.20324 0.84939 0.79508 0.74984 0.79055 1.17545 1.18849 1.19101 1.23173 1.04803 0.87834 0.97584 1.66878 1.16000 1.10880 1.30449 0.95290 0.88547 0.91708 0.91545 0.87774 0.92519 0.91263 0.82384 0.89149 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 9.53 71.98 0.69 -4.43 15 2 C 0.08 2.84 3.09 30.60 0.09 2.93 15 3 C -0.14 -3.59 9.56 71.98 0.69 -2.90 15 4 O -0.32 -14.87 9.84 -86.03 -0.85 -15.72 15 5 C 0.33 17.42 8.45 180.41 1.52 18.94 15 6 N -0.55 -28.60 8.60 -311.37 -2.68 -31.28 15 7 C 0.08 4.53 10.00 85.41 0.85 5.39 15 8 C -0.03 -1.61 5.61 -21.10 -0.12 -1.73 15 9 C -0.46 -22.28 9.10 23.43 0.21 -22.07 15 10 H 0.10 4.45 7.90 -2.91 -0.02 4.43 15 11 C 0.03 1.58 5.19 85.24 0.44 2.02 15 12 N -0.82 -39.35 10.91 21.82 0.24 -39.11 15 13 Si 1.00 34.08 29.59 68.60 2.03 36.11 15 14 H -0.25 -8.36 7.11 99.48 0.71 -7.65 15 15 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 16 H -0.27 -8.83 7.11 99.48 0.71 -8.12 15 17 C 0.03 1.70 11.11 85.40 0.95 2.65 15 18 N -0.52 -27.59 10.44 -311.38 -3.25 -30.84 15 19 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 20 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.06 1.95 8.14 -2.38 -0.02 1.93 15 22 H 0.07 2.64 6.93 -2.39 -0.02 2.62 15 23 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 26 H 0.16 8.43 6.17 -2.91 -0.02 8.41 15 27 H 0.30 12.73 8.30 -92.71 -0.77 11.96 15 28 H 0.17 7.40 8.06 -2.91 -0.02 7.38 15 Total: -1.00 -60.44 248.54 1.98 -58.46 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.15 Total: 21.58 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.33 Total: 0.80 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.69 Total: -101.23 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.85 Total: -15.72 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Total: -60.44 1.98 -58.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231922.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.132 kcal (2) G-P(sol) polarization free energy of solvation -60.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds