Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.46884 * 2 1 4 4 C 1.35279 * 117.00188 * 180.02562 * 3 2 1 5 5 N 1.32563 * 120.67978 * 359.97438 * 4 3 2 6 6 C 1.31869 * 120.98986 * 180.02562 * 5 4 3 7 7 C 1.50694 * 118.77137 * 179.97438 * 6 5 4 8 8 N 1.32042 * 122.45615 * 359.97438 * 6 5 4 9 9 C 1.32019 * 121.25213 * 359.70110 * 8 6 5 10 10 C 1.40914 * 118.83271 * 0.57162 * 9 8 6 11 11 C 1.41182 * 121.08414 * 179.72178 * 10 9 8 12 12 H 1.07995 * 120.00212 * 154.76706 * 11 10 9 13 13 C 1.39961 * 119.99510 * 334.76666 * 11 10 9 14 14 N 1.30859 * 119.99933 * 334.92440 * 13 11 10 15 15 Si 1.86797 * 119.99844 * 154.93041 * 13 11 10 16 16 H 1.48494 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.46845 * 299.99787 * 15 13 11 18 18 H 1.48494 * 109.47240 * 59.99581 * 15 13 11 19 19 H 1.08998 * 109.47117 * 299.99579 * 1 2 3 20 20 H 1.08996 * 109.47644 * 59.99995 * 1 2 3 21 21 H 1.09000 * 109.47029 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47117 * 240.00421 * 2 1 3 23 23 H 1.08994 * 109.47127 * 119.99985 * 2 1 3 24 24 H 1.09000 * 109.47085 * 90.00147 * 7 6 5 25 25 H 1.09001 * 109.47222 * 209.99501 * 7 6 5 26 26 H 1.08997 * 109.47319 * 330.00401 * 7 6 5 27 27 H 1.08004 * 120.58054 * 180.29446 * 9 8 6 28 28 H 0.96996 * 119.99784 * 354.23099 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3474 1.5246 -0.0005 5 7 4.1674 0.4830 -0.0005 6 6 5.4756 0.6488 -0.0005 7 6 6.3613 -0.5704 0.0001 8 7 6.0385 1.8432 -0.0011 9 6 5.3096 2.9439 -0.0075 10 6 3.9052 2.8290 -0.0016 11 6 3.0800 3.9746 -0.0022 12 1 2.0764 3.9170 -0.3967 13 6 3.5629 5.1849 0.5086 14 7 4.5212 5.1831 1.3997 15 14 2.8390 6.8027 -0.0815 16 1 3.5177 7.9293 0.6079 17 1 3.0369 6.9277 -1.5479 18 1 1.3869 6.8369 0.2268 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 6.5749 -0.8648 -1.0275 25 1 7.2949 -0.3411 0.5137 26 1 5.8547 -1.3872 0.5142 27 1 5.7815 3.9154 -0.0126 28 1 4.8394 4.3441 1.7680 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = -20.344083 kcal Electronic energy + Delta-G solvation = -13442.844072 eV Core-core repulsion = 11072.438824 eV Total energy + Delta-G solvation = -2370.405249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.57704 -37.35133 -34.75475 -31.95559 -31.39056 -30.19943 -28.20758 -24.55650 -23.36325 -21.75595 -21.20411 -18.19806 -17.30043 -16.30273 -15.48460 -14.35990 -14.02393 -13.75004 -13.42966 -13.38933 -12.52152 -12.31048 -12.15726 -11.78717 -11.64176 -11.42360 -11.19176 -11.05548 -10.59476 -10.47165 -10.25997 -9.57002 -9.10114 -8.85638 -8.08453 -7.82356 -7.38697 -4.57246 2.40529 2.63562 3.08886 3.17224 3.30138 3.88951 4.00064 4.43939 5.27680 5.31879 5.42677 5.50889 5.58403 5.74473 5.97625 6.22769 6.30618 6.32292 6.37206 6.41005 6.43234 6.73345 6.95409 7.40599 7.68837 7.76369 7.95749 8.37067 8.49221 8.74805 9.64525 9.80859 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.012761 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.572554 B = 2193.588033 C = 3183.507738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 O -0.300 6.300 4 C 0.241 3.759 5 N -0.544 5.544 6 C 0.169 3.831 7 C -0.051 4.051 8 N -0.498 5.498 9 C 0.016 3.984 10 C -0.001 4.001 11 C -0.473 4.473 12 H 0.088 0.912 13 C 0.034 3.966 14 N -0.781 5.781 15 Si 1.071 2.929 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.273 1.273 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.151 0.849 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -3.620 -1.699 5.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 O -0.206 6.206 4 C 0.048 3.952 5 N -0.273 5.273 6 C -0.093 4.093 7 C -0.110 4.110 8 N -0.214 5.214 9 C -0.151 4.151 10 C -0.008 4.008 11 C -0.502 4.502 12 H 0.106 0.894 13 C -0.189 4.189 14 N -0.404 5.404 15 Si 0.894 3.106 16 H -0.196 1.196 17 H -0.197 1.197 18 H -0.198 1.198 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.168 0.832 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.467 -2.635 -1.501 4.607 hybrid contribution -0.679 -1.252 -0.113 1.428 sum -4.146 -3.887 -1.615 5.908 Atomic orbital electron populations 1.21767 0.94127 1.01795 1.02954 1.22305 0.93801 0.83369 1.01275 1.86099 1.17780 1.27673 1.89057 1.20141 0.82877 0.89916 1.02245 1.67151 1.06343 1.34923 1.18880 1.21575 0.86435 0.92317 1.09004 1.20015 0.97005 0.92878 1.01076 1.67469 1.42081 0.98855 1.12961 1.22793 0.89255 0.95965 1.07080 1.18528 0.94168 0.91165 0.96964 1.20480 1.01971 0.93831 1.33894 0.89379 1.27287 0.93961 1.04660 0.93009 1.70505 1.19184 1.34269 1.16435 0.83538 0.76599 0.73193 0.77311 1.19554 1.19686 1.19807 0.91972 0.92028 0.91231 0.92915 0.92851 0.92612 0.91739 0.92120 0.83195 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 37.16 0.38 -1.76 15 2 C 0.07 1.29 6.06 37.16 0.23 1.51 15 3 O -0.30 -7.14 9.55 -17.53 -0.17 -7.30 15 4 C 0.24 6.30 7.57 -15.85 -0.12 6.18 15 5 N -0.54 -13.64 9.26 -10.18 -0.09 -13.74 15 6 C 0.17 4.12 7.64 -156.92 -1.20 2.92 15 7 C -0.05 -0.96 10.30 36.00 0.37 -0.59 15 8 N -0.50 -12.88 10.29 -10.14 -0.10 -12.99 15 9 C 0.02 0.42 9.24 -16.46 -0.15 0.26 15 10 C 0.00 -0.02 5.33 -106.38 -0.57 -0.58 15 11 C -0.47 -12.38 8.73 -37.82 -0.33 -12.71 15 12 H 0.09 2.28 7.79 -52.49 -0.41 1.87 15 13 C 0.03 0.82 4.99 -17.32 -0.09 0.74 15 14 N -0.78 -20.10 12.35 55.55 0.69 -19.42 15 15 Si 1.07 20.63 30.00 -169.99 -5.10 15.53 15 16 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 18 H -0.27 -5.00 7.11 56.52 0.40 -4.59 15 19 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.05 0.98 8.12 -51.93 -0.42 0.56 15 23 H 0.05 1.00 8.12 -51.93 -0.42 0.58 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.15 3.95 6.58 -52.48 -0.35 3.61 15 28 H 0.30 8.03 6.65 -40.82 -0.27 7.76 15 LS Contribution 249.02 15.07 3.75 3.75 Total: -1.00 -28.96 249.02 -5.70 -34.67 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.20 Total: 3.53 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.48 Total: -4.04 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.49 Total: -46.14 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.17 Total: -7.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.10 Total: 15.53 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.96 -5.70 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.321 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds