Wall clock time and date at job start Mon Mar 30 2020 02:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 H 1.09010 * 109.51902 * 304.99717 * 10 9 7 12 12 C 1.53152 * 109.51955 * 184.88128 * 10 9 7 13 13 C 1.53264 * 109.58082 * 170.88799 * 12 10 9 14 14 N 1.46469 * 108.81167 * 50.45917 * 13 12 10 15 15 N 1.28424 * 128.29678 * 162.72160 * 14 13 12 16 16 N 1.29004 * 108.66931 * 180.02562 * 15 14 13 17 17 N 1.29141 * 109.46176 * 359.97437 * 16 15 14 18 18 C 1.30297 * 107.74223 * 359.97438 * 17 16 15 19 19 C 1.50731 * 128.49842 * 180.16909 * 18 17 16 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.09001 * 109.45428 * 290.91837 * 12 10 9 24 24 H 1.09008 * 109.45720 * 50.87936 * 12 10 9 25 25 H 1.08997 * 109.58379 * 170.25689 * 13 12 10 26 26 H 1.09003 * 109.58226 * 290.66545 * 13 12 10 27 27 H 1.09000 * 109.77822 * 44.56899 * 19 18 17 28 28 H 1.08997 * 109.68342 * 283.89400 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9298 -3.5560 -0.8422 12 6 1.4846 -4.9857 -0.1234 13 6 2.4783 -6.1299 -0.3519 14 7 3.5317 -6.0503 0.6627 15 7 4.3665 -6.9599 1.0163 16 7 5.1272 -6.4844 1.9434 17 7 4.7883 -5.2637 2.1940 18 6 3.7934 -4.9588 1.4099 19 6 3.0424 -3.6557 1.3104 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 0.9246 -5.1690 0.7936 24 1 0.7945 -4.9311 -0.9654 25 1 1.9609 -7.0855 -0.2671 26 1 2.9195 -6.0379 -1.3444 27 1 3.7463 -2.8235 1.3096 28 1 2.3597 -3.5601 2.1547 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232104.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:02 Heat of formation + Delta-G solvation = 76.479381 kcal Electronic energy + Delta-G solvation = -13455.672981 eV Core-core repulsion = 11121.759064 eV Total energy + Delta-G solvation = -2333.913917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.31526 -39.02575 -36.14934 -34.75826 -32.98735 -31.58663 -29.11920 -26.30147 -24.94509 -24.40329 -22.85970 -20.65033 -18.66325 -18.25353 -17.90533 -16.62287 -16.22239 -15.47854 -15.30088 -14.82907 -14.11761 -13.95347 -13.69129 -13.25338 -13.10753 -12.93131 -12.54927 -12.44550 -12.28694 -12.20780 -11.77693 -11.52016 -11.22725 -10.99392 -10.86760 -10.49110 -8.14525 -6.21866 0.23699 1.12007 1.13172 1.43763 1.46851 1.55119 2.45531 2.99004 3.17323 3.22563 3.66749 3.75338 4.13720 4.27635 4.31116 4.34281 4.49425 4.68818 4.80210 4.90821 5.07835 5.15324 5.23178 5.37378 5.57314 5.76595 5.90560 6.30077 6.94591 7.47324 7.53391 8.96432 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.052291 B = 0.008039 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.334469 B = 3482.022922 C = 3874.481031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.036 3.964 10 C -0.079 4.079 11 H 0.072 0.928 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.295 5.295 15 N -0.102 5.102 16 N -0.117 5.117 17 N -0.336 5.336 18 C 0.198 3.802 19 C -0.021 4.021 20 H 0.261 0.739 21 H 0.004 0.996 22 H 0.009 0.991 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.126 0.874 27 H 0.099 0.901 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -9.448 -2.343 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.098 4.098 11 H 0.090 0.910 12 C -0.166 4.166 13 C -0.009 4.009 14 N -0.099 5.099 15 N -0.088 5.088 16 N -0.110 5.110 17 N -0.185 5.185 18 C -0.080 4.080 19 C -0.061 4.061 20 H 0.070 0.930 21 H 0.022 0.978 22 H 0.027 0.973 23 H 0.097 0.903 24 H 0.140 0.860 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.117 0.883 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.342 -10.252 -1.836 10.675 hybrid contribution -0.387 1.610 -0.304 1.684 sum 1.955 -8.642 -2.140 9.115 Atomic orbital electron populations 1.70044 1.07412 1.27448 1.52095 1.25732 0.95486 1.02527 0.95254 0.85721 0.78929 0.79900 0.78169 1.20282 1.21437 1.19046 1.21673 0.93535 0.92174 1.49627 0.92073 1.18986 0.93561 0.91292 0.96261 1.21269 0.97466 0.95601 0.95446 0.91004 1.22122 0.97389 0.91428 1.05705 1.22879 0.85200 1.03757 0.89057 1.48858 1.24834 1.07865 1.28364 1.78534 1.01516 1.16751 1.12044 1.78701 1.19389 1.03031 1.09889 1.74730 1.13022 1.07709 1.23058 1.26421 0.95815 0.94662 0.91097 1.20450 0.97723 0.87064 1.00895 0.93009 0.97765 0.97250 0.90295 0.85990 0.84355 0.85610 0.88299 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.99 13.29 21.45 0.28 -51.71 15 2 C 0.01 0.43 5.46 84.66 0.46 0.89 15 3 Si 0.95 41.59 29.54 68.60 2.03 43.62 15 4 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.53 -26.33 8.55 25.60 0.22 -26.12 15 8 H 0.06 2.92 7.13 -2.91 -0.02 2.90 15 9 C 0.04 1.54 4.43 29.85 0.13 1.67 15 10 C -0.08 -2.44 2.16 -10.60 -0.02 -2.46 15 11 H 0.07 2.23 8.13 -2.38 -0.02 2.21 15 12 C -0.13 -2.77 5.23 30.73 0.16 -2.61 15 13 C 0.11 1.98 7.24 86.47 0.63 2.61 15 14 N -0.30 -8.27 3.76 -338.45 -1.27 -9.54 15 15 N -0.10 -3.29 13.35 37.02 0.49 -2.80 15 16 N -0.12 -4.32 13.44 36.95 0.50 -3.82 15 17 N -0.34 -12.55 12.35 -50.82 -0.63 -13.17 15 18 C 0.20 6.44 7.83 138.38 1.08 7.52 15 19 C -0.02 -0.68 5.24 30.00 0.16 -0.52 15 20 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 21 H 0.00 0.18 8.11 -2.39 -0.02 0.17 15 22 H 0.01 0.42 8.13 -2.39 -0.02 0.40 15 23 H 0.08 1.71 8.12 -2.39 -0.02 1.69 15 24 H 0.12 2.22 8.11 -2.38 -0.02 2.20 15 25 H 0.14 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 27 H 0.10 3.41 7.39 -2.39 -0.02 3.40 15 28 H 0.10 3.24 8.09 -2.39 -0.02 3.22 15 Total: -1.00 -62.76 240.99 5.38 -57.39 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: 1.16 Total: -0.96 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 2.82 Total: -19.00 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -0.62 Total: -81.04 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -62.76 5.38 -57.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232104.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.867 kcal (2) G-P(sol) polarization free energy of solvation -62.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds