Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46763 * 2 1 4 4 C 1.35316 * 117.00164 * 180.02562 * 3 2 1 5 5 N 1.32598 * 118.88695 * 0.02562 * 4 3 2 6 6 C 1.31833 * 121.02496 * 179.74872 * 5 4 3 7 7 C 1.41157 * 118.84789 * 0.48080 * 6 5 4 8 8 C 1.41321 * 120.98559 * 179.78224 * 7 6 5 9 9 H 1.08004 * 119.99869 * 208.53012 * 8 7 6 10 10 C 1.39892 * 119.99961 * 28.53209 * 8 7 6 11 11 N 1.30879 * 120.00328 * 196.89461 * 10 8 7 12 12 Si 1.86802 * 119.99978 * 16.89357 * 10 8 7 13 13 H 1.48497 * 109.47436 * 269.99772 * 12 10 8 14 14 H 1.48502 * 109.47000 * 30.00433 * 12 10 8 15 15 H 1.48505 * 109.46755 * 150.00048 * 12 10 8 16 16 C 1.41127 * 118.02622 * 359.51587 * 7 6 5 17 17 C 1.50699 * 120.57692 * 180.22532 * 16 7 6 18 18 N 1.31847 * 118.85015 * 0.24594 * 16 7 6 19 19 H 1.09007 * 109.46776 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47284 * 299.99665 * 1 2 3 21 21 H 1.08991 * 109.47522 * 60.00545 * 1 2 3 22 22 H 1.08993 * 109.47417 * 240.00025 * 2 1 3 23 23 H 1.08999 * 109.47352 * 119.99208 * 2 1 3 24 24 H 1.08008 * 120.57227 * 180.25028 * 6 5 4 25 25 H 0.97008 * 119.99319 * 355.48083 * 11 10 8 26 26 H 1.08994 * 109.47118 * 89.99539 * 17 16 7 27 27 H 1.09002 * 109.47527 * 209.99934 * 17 16 7 28 28 H 1.09008 * 109.47293 * 329.99791 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3477 1.5247 -0.0005 5 7 4.1350 0.4577 -0.0015 6 6 5.4474 0.5817 -0.0071 7 6 6.0093 1.8766 -0.0015 8 6 7.4103 2.0619 -0.0025 9 1 7.8385 2.9452 0.4480 10 6 8.2424 1.1012 -0.5869 11 7 9.5218 1.0885 -0.3110 12 14 7.5277 -0.1636 -1.7612 13 1 7.0978 -1.3618 -0.9965 14 1 6.3580 0.4202 -2.4655 15 1 8.5594 -0.5548 -2.7551 16 6 5.1303 2.9808 -0.0008 17 6 5.6680 4.3886 -0.0002 18 7 3.8306 2.7593 -0.0004 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 6.0818 -0.2925 -0.0119 25 1 9.9046 1.7841 0.2464 26 1 5.7976 4.7285 -1.0276 27 1 4.9663 5.0454 0.5141 28 1 6.6292 4.4103 0.5136 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234823.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -9.956855 kcal Electronic energy + Delta-G solvation = -13383.397887 eV Core-core repulsion = 11013.443062 eV Total energy + Delta-G solvation = -2369.954825 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.77715 -37.49506 -34.18249 -33.10594 -31.71739 -30.42327 -27.94776 -24.92305 -23.08434 -22.27210 -20.70808 -18.71198 -17.44386 -16.58286 -15.70071 -14.77394 -14.07271 -13.71666 -13.60159 -13.12171 -12.97531 -12.50278 -12.33984 -11.95905 -11.63767 -11.46083 -11.10440 -10.95995 -10.61490 -10.32526 -9.99455 -9.65523 -9.32337 -9.26668 -8.01381 -7.95471 -7.39627 -4.69327 2.25729 2.34644 3.06326 3.20456 3.37952 3.60276 3.83063 4.44610 5.16931 5.32155 5.33231 5.38112 5.52498 5.73055 5.82024 6.02400 6.13627 6.27151 6.32169 6.38155 6.44558 6.71839 6.92782 7.15266 7.32669 7.77607 8.00484 8.05641 8.37469 8.61370 9.42443 9.80942 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.010818 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.168534 B = 2587.626061 C = 3172.544315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 O -0.308 6.308 4 C 0.355 3.645 5 N -0.530 5.530 6 C 0.025 3.975 7 C -0.020 4.020 8 C -0.488 4.488 9 H 0.088 0.912 10 C 0.042 3.958 11 N -0.804 5.804 12 Si 1.064 2.936 13 H -0.270 1.270 14 H -0.267 1.267 15 H -0.281 1.281 16 C 0.091 3.909 17 C -0.073 4.073 18 N -0.493 5.493 19 H 0.072 0.928 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.149 0.851 25 H 0.289 0.711 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 -1.369 -0.747 6.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.002 3.998 3 O -0.214 6.214 4 C 0.055 3.945 5 N -0.256 5.256 6 C -0.142 4.142 7 C -0.027 4.027 8 C -0.517 4.517 9 H 0.106 0.894 10 C -0.179 4.179 11 N -0.426 5.426 12 Si 0.890 3.110 13 H -0.197 1.197 14 H -0.192 1.192 15 H -0.207 1.207 16 C -0.061 4.061 17 C -0.131 4.131 18 N -0.216 5.216 19 H 0.091 0.909 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.166 0.834 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.454 -2.654 -1.607 8.074 hybrid contribution 0.739 1.190 1.058 1.755 sum -6.715 -1.464 -0.549 6.895 Atomic orbital electron populations 1.21782 0.93878 1.02081 1.02910 1.22321 0.93622 0.82060 1.01814 1.85811 1.16477 1.28761 1.90320 1.19739 0.84094 0.85336 1.05379 1.67328 1.07258 1.34073 1.16945 1.22785 0.88996 0.96746 1.05706 1.19117 0.95981 0.92644 0.95004 1.20480 0.90292 1.08117 1.32845 0.89419 1.27222 0.94409 0.99130 0.97154 1.70552 1.13660 1.29947 1.28433 0.83707 0.75709 0.75415 0.76160 1.19713 1.19185 1.20750 1.21377 0.86336 0.96052 1.02313 1.20324 1.00198 0.90771 1.01796 1.66655 1.16443 1.22373 1.16104 0.90870 0.92005 0.91984 0.92487 0.92481 0.83410 0.89892 0.91648 0.92289 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.54 15 2 C 0.08 1.37 5.99 37.16 0.22 1.59 15 3 O -0.31 -6.84 10.19 -17.64 -0.18 -7.02 15 4 C 0.35 8.83 8.48 -90.79 -0.77 8.06 15 5 N -0.53 -13.11 9.16 -14.08 -0.13 -13.24 15 6 C 0.02 0.61 8.56 -16.44 -0.14 0.47 15 7 C -0.02 -0.51 5.16 -106.52 -0.55 -1.06 15 8 C -0.49 -12.19 8.87 -37.79 -0.34 -12.52 15 9 H 0.09 2.18 6.63 -52.48 -0.35 1.83 15 10 C 0.04 1.02 5.44 -17.34 -0.09 0.93 15 11 N -0.80 -20.15 13.66 55.54 0.76 -19.39 15 12 Si 1.06 23.20 24.89 -169.99 -4.23 18.97 15 13 H -0.27 -5.59 6.44 56.52 0.36 -5.23 15 14 H -0.27 -6.02 6.99 56.52 0.39 -5.63 15 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 16 C 0.09 2.20 6.90 -81.49 -0.56 1.64 15 17 C -0.07 -1.45 9.86 36.01 0.35 -1.09 15 18 N -0.49 -12.44 10.38 -10.33 -0.11 -12.55 15 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.06 0.99 8.08 -51.93 -0.42 0.57 15 23 H 0.06 0.99 8.09 -51.93 -0.42 0.57 15 24 H 0.15 3.50 4.41 -52.48 -0.23 3.27 15 25 H 0.29 6.99 8.73 -40.82 -0.36 6.64 15 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.07 1.38 6.43 -51.92 -0.33 1.05 15 LS Contribution 241.43 15.07 3.64 3.64 Total: -1.00 -28.29 241.43 -4.81 -33.09 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.06 Total: 0.03 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.49 Total: -3.53 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.52 Total: -45.19 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.18 Total: -7.02 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.23 Total: 18.97 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.29 -4.81 -33.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234823.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.137 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds