Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46763 * 2 1 4 4 C 1.35316 * 117.00164 * 180.02562 * 3 2 1 5 5 N 1.32598 * 118.88695 * 0.02562 * 4 3 2 6 6 C 1.31833 * 121.02496 * 179.74872 * 5 4 3 7 7 C 1.41157 * 118.84789 * 0.48080 * 6 5 4 8 8 C 1.41321 * 120.98559 * 179.78224 * 7 6 5 9 9 H 1.08004 * 119.99869 * 208.53012 * 8 7 6 10 10 C 1.39892 * 119.99961 * 28.53209 * 8 7 6 11 11 N 1.30879 * 120.00328 * 196.89461 * 10 8 7 12 12 Si 1.86802 * 119.99978 * 16.89357 * 10 8 7 13 13 H 1.48497 * 109.47436 * 269.99772 * 12 10 8 14 14 H 1.48502 * 109.47000 * 30.00433 * 12 10 8 15 15 H 1.48505 * 109.46755 * 150.00048 * 12 10 8 16 16 C 1.41127 * 118.02622 * 359.51587 * 7 6 5 17 17 C 1.50699 * 120.57692 * 180.22532 * 16 7 6 18 18 N 1.31847 * 118.85015 * 0.24594 * 16 7 6 19 19 H 1.09007 * 109.46776 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47284 * 299.99665 * 1 2 3 21 21 H 1.08991 * 109.47522 * 60.00545 * 1 2 3 22 22 H 1.08993 * 109.47417 * 240.00025 * 2 1 3 23 23 H 1.08999 * 109.47352 * 119.99208 * 2 1 3 24 24 H 1.08008 * 120.57227 * 180.25028 * 6 5 4 25 25 H 0.97008 * 119.99319 * 355.48083 * 11 10 8 26 26 H 1.08994 * 109.47118 * 89.99539 * 17 16 7 27 27 H 1.09002 * 109.47527 * 209.99934 * 17 16 7 28 28 H 1.09008 * 109.47293 * 329.99791 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3477 1.5247 -0.0005 5 7 4.1350 0.4577 -0.0015 6 6 5.4474 0.5817 -0.0071 7 6 6.0093 1.8766 -0.0015 8 6 7.4103 2.0619 -0.0025 9 1 7.8385 2.9452 0.4480 10 6 8.2424 1.1012 -0.5869 11 7 9.5218 1.0885 -0.3110 12 14 7.5277 -0.1636 -1.7612 13 1 7.0978 -1.3618 -0.9965 14 1 6.3580 0.4202 -2.4655 15 1 8.5594 -0.5548 -2.7551 16 6 5.1303 2.9808 -0.0008 17 6 5.6680 4.3886 -0.0002 18 7 3.8306 2.7593 -0.0004 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 6.0818 -0.2925 -0.0119 25 1 9.9046 1.7841 0.2464 26 1 5.7976 4.7285 -1.0276 27 1 4.9663 5.0454 0.5141 28 1 6.6292 4.4103 0.5136 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234823.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -30.853785 kcal Electronic energy + Delta-G solvation = -13384.304046 eV Core-core repulsion = 11013.443062 eV Total energy + Delta-G solvation = -2370.860984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.63603 -39.19478 -36.06032 -34.96284 -33.35112 -31.93773 -29.68241 -26.78699 -24.60617 -24.05108 -22.40652 -20.59810 -19.20403 -18.41970 -17.31882 -16.55344 -15.83248 -15.54539 -15.26088 -14.83704 -14.65105 -13.98098 -13.81645 -13.36001 -13.19804 -13.02496 -12.71819 -12.49814 -12.38794 -12.01793 -11.64847 -11.45034 -11.17387 -11.09526 -9.92019 -9.84710 -9.31180 -6.62427 0.36029 0.42280 1.31917 1.45934 1.66626 1.96770 2.05984 2.54964 3.27223 3.47758 3.90055 3.98385 4.10600 4.24314 4.48496 4.52606 4.74350 4.79694 4.84072 4.96818 5.05032 5.11370 5.22862 5.33778 5.43595 5.90080 6.07874 6.21007 6.50463 6.71869 7.52373 7.90319 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.010818 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.168534 B = 2587.626061 C = 3172.544315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 O -0.318 6.318 4 C 0.348 3.652 5 N -0.534 5.534 6 C 0.013 3.987 7 C -0.038 4.038 8 C -0.499 4.499 9 H 0.082 0.918 10 C 0.020 3.980 11 N -0.819 5.819 12 Si 1.088 2.912 13 H -0.253 1.253 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.086 3.914 17 C -0.070 4.070 18 N -0.511 5.511 19 H 0.106 0.894 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.158 0.842 25 H 0.288 0.712 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 -1.759 -1.007 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.007 4.007 3 O -0.224 6.224 4 C 0.047 3.953 5 N -0.261 5.261 6 C -0.153 4.153 7 C -0.045 4.045 8 C -0.528 4.528 9 H 0.100 0.900 10 C -0.197 4.197 11 N -0.441 5.441 12 Si 0.911 3.089 13 H -0.179 1.179 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.065 4.065 17 C -0.127 4.127 18 N -0.234 5.234 19 H 0.125 0.875 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.174 0.826 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.423 -3.055 -1.854 9.150 hybrid contribution 0.944 1.338 1.162 2.008 sum -7.479 -1.716 -0.692 7.704 Atomic orbital electron populations 1.21799 0.90128 1.04384 1.03273 1.22731 0.96482 0.79969 1.01544 1.85839 1.14963 1.31664 1.89926 1.20162 0.85240 0.85455 1.04410 1.67383 1.07167 1.34047 1.17542 1.23009 0.89323 0.97164 1.05804 1.19307 0.96248 0.93242 0.95714 1.20484 0.90401 1.08361 1.33592 0.90008 1.27934 0.94285 1.00023 0.97508 1.70588 1.13985 1.30372 1.29188 0.83379 0.75144 0.74877 0.75546 1.17907 1.20679 1.19201 1.22092 0.86120 0.97821 1.00474 1.20409 1.00603 0.88622 1.03097 1.66794 1.16839 1.22683 1.17111 0.87548 0.91626 0.91616 0.92767 0.92734 0.82563 0.90033 0.90087 0.90519 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 10.28 71.98 0.74 -2.45 15 2 C 0.07 2.28 5.99 71.98 0.43 2.71 15 3 O -0.32 -13.81 10.19 -86.04 -0.88 -14.69 15 4 C 0.35 17.07 8.48 180.41 1.53 18.60 15 5 N -0.53 -26.08 9.16 -311.36 -2.85 -28.93 15 6 C 0.01 0.63 8.56 85.41 0.73 1.36 15 7 C -0.04 -1.90 5.16 -21.10 -0.11 -2.01 15 8 C -0.50 -24.76 8.87 23.43 0.21 -24.55 15 9 H 0.08 4.07 6.63 -2.91 -0.02 4.05 15 10 C 0.02 0.98 5.44 85.24 0.46 1.45 15 11 N -0.82 -40.58 13.66 21.82 0.30 -40.28 15 12 Si 1.09 45.73 24.89 68.60 1.71 47.43 15 13 H -0.25 -9.90 6.44 99.48 0.64 -9.26 15 14 H -0.28 -12.42 6.99 99.48 0.69 -11.73 15 15 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 16 C 0.09 4.12 6.90 43.27 0.30 4.41 15 17 C -0.07 -2.66 9.86 71.24 0.70 -1.95 15 18 N -0.51 -25.36 10.38 -299.50 -3.11 -28.47 15 19 H 0.11 1.76 8.14 -2.38 -0.02 1.74 15 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.05 1.82 8.08 -2.39 -0.02 1.80 15 23 H 0.05 1.82 8.09 -2.39 -0.02 1.80 15 24 H 0.16 7.26 4.41 -2.91 -0.01 7.25 15 25 H 0.29 13.90 8.73 -92.70 -0.81 13.09 15 26 H 0.08 2.82 8.14 -2.39 -0.02 2.81 15 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 15 28 H 0.08 2.85 6.43 -2.38 -0.02 2.83 15 Total: -1.00 -58.51 241.43 1.21 -57.29 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.05 Total: 10.07 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.00 Total: -2.43 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -5.66 Total: -97.68 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.88 Total: -14.69 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.71 Total: 47.43 kcal Total: -58.51 1.21 -57.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234823.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.437 kcal (2) G-P(sol) polarization free energy of solvation -58.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds