Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46715 * 2 1 4 4 C 1.50702 * 109.47246 * 120.00034 * 2 1 3 5 5 H 1.07999 * 119.99381 * 120.00447 * 4 2 1 6 6 C 1.37875 * 119.99951 * 300.00157 * 4 2 1 7 7 N 1.31512 * 120.00263 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99499 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47337 * 60.00072 * 8 6 4 10 10 H 1.48503 * 109.46670 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47220 * 299.99751 * 8 6 4 12 12 C 1.50699 * 109.47104 * 240.00620 * 2 1 3 13 13 C 1.36199 * 120.70671 * 120.01756 * 12 2 1 14 14 N 1.33516 * 119.91257 * 179.97438 * 13 12 2 15 15 C 1.30649 * 121.50229 * 359.71225 * 14 13 12 16 16 N 1.34747 * 121.49152 * 0.58284 * 15 14 13 17 17 C 1.46499 * 120.04123 * 179.69640 * 16 15 14 18 18 C 1.35027 * 119.91611 * 359.42787 * 16 15 14 19 19 O 1.21975 * 120.70740 * 180.25135 * 18 16 15 20 20 H 1.08999 * 109.47019 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46939 * 299.99605 * 1 2 3 22 22 H 1.08998 * 109.47380 * 59.99764 * 1 2 3 23 23 H 0.97002 * 120.00041 * 179.97438 * 7 6 4 24 24 H 1.08005 * 120.04412 * 359.95761 * 13 12 2 25 25 H 1.08001 * 119.25177 * 180.30028 * 15 14 13 26 26 H 1.09002 * 109.47391 * 269.72680 * 17 16 15 27 27 H 1.09001 * 109.46813 * 149.72737 * 17 16 15 28 28 H 1.09004 * 109.47041 * 29.72864 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1211 4.0080 10 1 1.8260 -0.4208 5.2203 11 1 1.8259 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2305 13 6 2.8165 -0.0623 -2.1362 14 7 3.2532 -0.7071 -3.2207 15 6 2.9508 -1.9593 -3.4385 16 7 2.1745 -2.6547 -2.5844 17 6 1.8499 -4.0558 -2.8632 18 6 1.7008 -2.0602 -1.4684 19 8 1.0007 -2.6774 -0.6831 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 0.7090 1.1613 3.4845 24 1 3.0845 0.9719 -1.9774 25 1 3.3278 -2.4467 -4.3254 26 1 0.9304 -4.1066 -3.4465 27 1 1.7140 -4.5912 -1.9235 28 1 2.6636 -4.5121 -3.4270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261235938.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = -16.833750 kcal Electronic energy + Delta-G solvation = -13718.996435 eV Core-core repulsion = 11348.743405 eV Total energy + Delta-G solvation = -2370.253029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.57586 -38.48170 -37.22746 -35.31738 -33.16348 -30.36018 -28.73138 -27.22966 -25.40202 -24.18687 -22.18312 -19.36614 -18.26520 -18.04862 -17.35527 -17.07109 -16.54329 -15.32428 -15.03678 -14.60183 -14.22458 -13.99915 -13.74152 -13.45565 -13.33820 -12.93315 -12.79864 -12.44373 -12.19282 -12.05793 -11.38508 -10.97170 -10.75511 -10.70468 -10.41271 -9.09300 -8.08493 -6.19248 -0.08020 1.04434 1.35113 1.38936 1.46107 1.70572 2.41844 2.84178 3.17894 3.41083 3.72463 3.98203 4.25456 4.48572 4.51069 4.68742 4.83131 4.94269 4.97350 5.15628 5.26429 5.53232 5.61382 5.75890 5.93896 6.02344 6.36599 6.82061 6.98493 7.05348 7.45030 8.95833 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.040730 B = 0.010629 C = 0.009813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.293529 B = 2633.560292 C = 2852.782967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.098 3.902 3 H 0.020 0.980 4 C -0.502 4.502 5 H 0.032 0.968 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.283 1.283 12 C -0.235 4.235 13 C 0.123 3.877 14 N -0.551 5.551 15 C 0.361 3.639 16 N -0.528 5.528 17 C 0.055 3.945 18 C 0.504 3.496 19 O -0.561 6.561 20 H 0.024 0.976 21 H 0.059 0.941 22 H 0.021 0.979 23 H 0.262 0.738 24 H 0.165 0.835 25 H 0.264 0.736 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -7.350 -14.162 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 H 0.038 0.962 4 C -0.540 4.540 5 H 0.050 0.950 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.209 1.209 12 C -0.242 4.242 13 C -0.014 4.014 14 N -0.273 5.273 15 C 0.078 3.922 16 N -0.246 5.246 17 C -0.086 4.086 18 C 0.304 3.696 19 O -0.440 6.440 20 H 0.043 0.957 21 H 0.078 0.922 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.182 0.818 25 H 0.279 0.721 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.480 -7.108 -13.952 16.287 hybrid contribution -0.492 -0.598 1.813 1.971 sum 3.988 -7.706 -12.140 14.922 Atomic orbital electron populations 1.21587 0.98187 0.98905 0.99223 1.17325 0.92607 0.93584 0.88638 0.96156 1.21096 1.30349 1.11077 0.91525 0.94964 1.25644 0.95624 0.95903 1.01532 1.69979 1.37866 1.24068 1.23923 0.85725 0.78946 0.78406 0.79242 1.19326 1.20030 1.20936 1.22152 1.05647 0.94681 1.01734 1.22555 0.90616 1.00417 0.87817 1.68302 1.28384 1.08425 1.22169 1.26033 0.84799 0.87876 0.93516 1.46838 1.41686 1.15860 1.20214 1.22424 1.05057 0.77470 1.03608 1.17367 0.82117 0.88645 0.81497 1.90871 1.39933 1.66769 1.46447 0.95695 0.92220 0.96032 0.92922 0.81764 0.72062 0.89113 0.91613 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.67 8.77 71.98 0.63 -6.03 15 2 C 0.10 5.38 2.39 -12.28 -0.03 5.35 15 3 H 0.02 1.16 7.90 -2.38 -0.02 1.14 15 4 C -0.50 -30.40 7.65 25.60 0.20 -30.20 15 5 H 0.03 2.01 7.59 -2.91 -0.02 1.99 15 6 C 0.01 0.63 5.30 84.65 0.45 1.08 15 7 N -0.92 -55.90 11.32 21.45 0.24 -55.66 15 8 Si 0.95 47.25 29.54 68.60 2.03 49.28 15 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 11 H -0.28 -14.23 7.11 99.48 0.71 -13.53 15 12 C -0.24 -10.76 4.73 -19.66 -0.09 -10.86 15 13 C 0.12 4.57 10.84 83.96 0.91 5.48 15 14 N -0.55 -16.11 10.39 -199.72 -2.08 -18.18 15 15 C 0.36 7.77 11.48 180.31 2.07 9.84 15 16 N -0.53 -14.99 2.97 -678.56 -2.02 -17.01 15 17 C 0.06 1.01 10.41 127.77 1.33 2.34 15 18 C 0.50 21.91 7.03 84.88 0.60 22.50 15 19 O -0.56 -29.23 13.90 -5.23 -0.07 -29.30 15 20 H 0.02 1.40 6.42 -2.39 -0.02 1.39 15 21 H 0.06 3.53 6.07 -2.38 -0.01 3.52 15 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 24 H 0.17 5.68 7.96 -2.91 -0.02 5.66 15 25 H 0.26 1.73 8.02 -2.91 -0.02 1.71 15 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 27 H 0.06 1.61 7.46 -2.39 -0.02 1.59 15 28 H 0.14 0.97 8.01 -2.38 -0.02 0.95 15 Total: -1.00 -79.99 242.07 5.32 -74.66 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: 1.16 Total: -3.29 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.06 Total: -0.50 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -3.85 Total: -90.85 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.07 Total: -29.30 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -79.99 5.32 -74.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235938.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.829 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds